View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15352_low_5 (Length: 497)
Name: NF15352_low_5
Description: NF15352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15352_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 14 - 481
Target Start/End: Complemental strand, 9417948 - 9417481
Alignment:
| Q |
14 |
agcagagaaagatgcaaaaccaaacaaaacacttcgaggattcaacctaattgacgacatcaagagtaacttagaacaacaatgcccccaaaccgtttcg |
113 |
Q |
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| T |
9417948 |
agcagagaaagatgcaaaaccaaacaaaacacttcgaggattcaacctaattgacgacatcaagagtaacttagaacaacaatgcccccaaaccgtttcg |
9417849 |
T |
|
| Q |
114 |
tgtgccgatatcctaacaattgccacaagagatgcaattgcattatcaaatggaccgacatacaatgtcctaacaggaagaagagatgggttagtatcca |
213 |
Q |
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| T |
9417848 |
tgtgccgatatcctaacaattgccacaagagatgcaattgcattatcaaatggaccaacatacaatgtcctaacaggaagaagagatgggttagtatcca |
9417749 |
T |
|
| Q |
214 |
atggcttcaatgtaaccattcctggaccattctctaatgtgtcacaagctctaaannnnnnnacctcaaaagggttaacattagaagacatggtaaccct |
313 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9417748 |
atggcttcaatgtaaccattcctggaccattctcaaatgtgtcacaagctctaaatttttttacctcaaaagggttaacattagaagacatggtaaccct |
9417649 |
T |
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| Q |
314 |
tatgggagcacacacaattggttttgctaaatgtatcttctttcaaagtaggctatcaagttttaatggacatattgatcctacaatggatcctaattta |
413 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9417648 |
tatgggtgcacacactattggttttgctaaatgtatcttctttcaaagtaggctatcaagttttaatggaaatattgatcctacaatggatcctaattta |
9417549 |
T |
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| Q |
414 |
gatgcttttttggttgaaaaatgtggatcaagagggaatgaaacttcagtgtttttggatcaaaaaac |
481 |
Q |
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| T |
9417548 |
gatgcttttttggttgaaaaatgtggatcaagagggaatgaaacttcagtgtttttggatcaaaaaac |
9417481 |
T |
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