View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15353_low_1 (Length: 671)
Name: NF15353_low_1
Description: NF15353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15353_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 248 - 661
Target Start/End: Original strand, 28921517 - 28921930
Alignment:
| Q |
248 |
cttcaaaaacatcactgagttgagtctctcctcagattgtatgacaaggagtggaagaaataagaacatgtaagagattcacatgagagataagaattat |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28921517 |
cttcaaaaacatcactgagttgagtctctcctgagattgtatgacaatgagtggaagaaataagaacatgttagagattcacatgagagataagaattat |
28921616 |
T |
|
| Q |
348 |
actggcaaatttttcgatctcacaaagtgtcaaaggataaagtacttttttatcctttgacatcaaggagaaaagagcttaagtgcatccctcagaagca |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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|
| T |
28921617 |
actggcaaatttttcgatctcacaaagtgtcaaaggataaagtacttttttatcctttgacatcaaggaaaaaagagcttaagtgcatcccttagaagca |
28921716 |
T |
|
| Q |
448 |
ttgcctctctttcactctcgcctgtcttccagaccttgaagtctaagggagcatatgtggaatccaattcactccagtgtttgagtacagtcattggaaa |
547 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28921717 |
ttgcctctctttcactctcacccgtcttccagaccttgaagtctaagggagcatatgtggaatccaattcactccagtgtttgagtacagtcattggaaa |
28921816 |
T |
|
| Q |
548 |
aggccctcttgttccacagcctcgaacacccgaacagtaccaaataggaatatcaatactctcctctccctttcttccagatgaagttacttcaatactc |
647 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28921817 |
aggccctcttgttccacagccacgaacacccgaacagtaccaaataggaatatcaatactctccactccctttcttccagatgaagttacttcaatactc |
28921916 |
T |
|
| Q |
648 |
acatcctcttcatc |
661 |
Q |
| |
|
|||||||||||||| |
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|
| T |
28921917 |
acatcctcttcatc |
28921930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 402 - 661
Target Start/End: Original strand, 28912175 - 28912434
Alignment:
| Q |
402 |
ctttgacatcaaggagaaaagagcttaagtgcatccctcagaagcattgcctctctttcactctcgcctgtcttccagaccttgaagtctaagggagcat |
501 |
Q |
| |
|
||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
28912175 |
ctttgacattagggaaaaaagagcttaagtgcatccctcagaagcattgcctctctttcactctcgcccgtcttccagaccttgaagtctaagggagcat |
28912274 |
T |
|
| Q |
502 |
atgtggaatccaattcactccagtgtttgagtacagtcattggaaaaggccctcttgttccacagcctcgaacacccgaacagtaccaaataggaatatc |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28912275 |
atgtggaatccaattcactccagtgtttgagtacagtcattggaaaaggccctcttgttccacagccacgaacacccgaacagtaccaaataggaatatc |
28912374 |
T |
|
| Q |
602 |
aatactctcctctccctttcttccagatgaagttacttcaatactcacatcctcttcatc |
661 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||| | || |||||||||||||||| |
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|
| T |
28912375 |
aatactctccgctccctttcttccagatgaagtgactttactattcacatcctcttcatc |
28912434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 418 - 661
Target Start/End: Original strand, 28897686 - 28897929
Alignment:
| Q |
418 |
aaaagagcttaagtgcatccctcagaagcattgcctctctttcactctcgcctgtcttccagaccttgaagtctaagggagcatatgtggaatccaattc |
517 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| | |||||||||||||||| |
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|
| T |
28897686 |
aaaacagcttaagtgcatccctcagaagcattgcctctctttcactttcacctgtcttccagaccttgaagtctaagggagaaaatgtggaatccaattc |
28897785 |
T |
|
| Q |
518 |
actccagtgtttgagtacagtcattggaaaaggccctcttgttccacagcctcgaacacccgaacagtaccaaataggaatatcaatactctcctctccc |
617 |
Q |
| |
|
||||| |||||||||| || |||||||||||||||||||||||||| || | || ||||||||||| |||||||||||||||| ||||||| ||||| |
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|
| T |
28897786 |
gctccactgtttgagtatagacattggaaaaggccctcttgttccactaccacaaatacccgaacagtgccaaataggaatatcaggactctccactccc |
28897885 |
T |
|
| Q |
618 |
tttcttccagatgaagttacttcaatactcacatcctcttcatc |
661 |
Q |
| |
|
|||||| | |||||||||| || |||| |||||||||||||||| |
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|
| T |
28897886 |
tttctttccgatgaagttattttaatattcacatcctcttcatc |
28897929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 77 - 247
Target Start/End: Original strand, 28921249 - 28921417
Alignment:
| Q |
77 |
ctagctttaaatcatttctcccttatctagcttcactagtttgcgtatgcagtgaaatgtgaattatgcagccatccagaaattttaaaaatataaattc |
176 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28921249 |
ctagctttaaatcatttttcccttatctagcttcactagtttgcgtatgcagtaaaatttgaattatgcagccatccagaaattttaaaaatataaattc |
28921348 |
T |
|
| Q |
177 |
ttgaaaatttattgtactccatgaaaaactgtggataatggttgaaacctgatcataattttatgagataa |
247 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28921349 |
ttgaaaatttattgtactccatg--aaactgtggataatggttgaaacctgatcataattttatgagataa |
28921417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 418 - 623
Target Start/End: Original strand, 28888022 - 28888227
Alignment:
| Q |
418 |
aaaagagcttaagtgcatccctcagaagcattgcctctctttcactctcgcctgtcttccagaccttgaagtctaagggagcatatgtggaatccaattc |
517 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| | |||||||||||||||| |
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|
| T |
28888022 |
aaaagagcccaagtgcatccctcagaagcattgcctctctttcactctcatctgtcttccagaccttgaaatctaagggagaaaatgtggaatccaattc |
28888121 |
T |
|
| Q |
518 |
actccagtgtttgagtacagtcattggaaaaggccctcttgttccacagcctcgaacacccgaacagtaccaaataggaatatcaatactctcctctccc |
617 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||| ||| || |||| ||| ||||| |||||||| | ||||||| | ||||| ||||| |
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|
| T |
28888122 |
gctccagtgtttgagtacagacattggaaaaggcccttttgtttcactaccacgaatacctgaacaataccaaatggaaatatcaggattctccactccc |
28888221 |
T |
|
| Q |
618 |
tttctt |
623 |
Q |
| |
|
|||||| |
|
|
| T |
28888222 |
tttctt |
28888227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 418 - 661
Target Start/End: Original strand, 28930759 - 28930998
Alignment:
| Q |
418 |
aaaagagcttaagtgcatccctcagaagcattgcctctctttcactctcgcctgtcttccagaccttgaagtctaagggagcatatgtggaatccaattc |
517 |
Q |
| |
|
||||||||| |||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||| ||| |||||||| | |||||| | |||| |
|
|
| T |
28930759 |
aaaagagct-aagtgcatccctcaaaagtattgcctctctttcactctcacctgtcttccagaccttgtagtttaagggagaagatgtgg---cagattc |
28930854 |
T |
|
| Q |
518 |
actccagtgtttgagtacagtcattggaaaaggccctcttgttccacagcctcgaacacccgaacagtaccaaataggaatatcaatactctcctctccc |
617 |
Q |
| |
|
|||||| |||||||||||| ||||| |||||||||| ||||||||| ||||||| ||||||||| | |||||| | || |||| |||| || ||||| |
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|
| T |
28930855 |
gctccagcgtttgagtacagacattgaaaaaggcccttttgttccaccacctcgaatacccgaacaatgccaaatggaaacatcagaactcaccactccc |
28930954 |
T |
|
| Q |
618 |
tttcttccagatgaagttacttcaatactcacatcctcttcatc |
661 |
Q |
| |
|
|||||| | | |||||| |||| |||| | |||||||||||||| |
|
|
| T |
28930955 |
tttctttctgctgaagtgactttaatattaacatcctcttcatc |
28930998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 246 - 399
Target Start/End: Original strand, 28911906 - 28912060
Alignment:
| Q |
246 |
aacttcaaaaacatcactgagttgagtctctcctcagattgtatgacaaggagtggaagaaa-taagaacatgtaagagattcacatgagagataagaat |
344 |
Q |
| |
|
||||||||||||||||||||||||||| | | |||| | |||||||||||| || | |||| ||| ||||||| ||||||| |||||||| ||||| || |
|
|
| T |
28911906 |
aacttcaaaaacatcactgagttgagtttgtgctcaaactgtatgacaaggtgtacaggaaaataaaaacatgttagagattgacatgagaaataaggat |
28912005 |
T |
|
| Q |
345 |
tatactggcaaatttttcgatctcacaaagtgtcaaaggataaagtactttttta |
399 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28912006 |
tatacgggcaaatttttcgatctcacaaagtgtcaaaggataaagtactttttta |
28912060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 28909741 - 28909794
Alignment:
| Q |
54 |
tgtcaacaataaatcatagtttgctagctttaaatcatttctcccttatctagc |
107 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||| || || ||||||| |
|
|
| T |
28909741 |
tgtcaacaataaaccatagtctgctagctttaaatcatttttctctcatctagc |
28909794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 246 - 325
Target Start/End: Original strand, 28897403 - 28897483
Alignment:
| Q |
246 |
aacttcaaaaacatcactgagttgagtctctcctcagattgtatgacaaggagtggaag-aaataagaacatgtaagagat |
325 |
Q |
| |
|
||||||||||||||||||| |||||| | | |||| ||||||||||||||||| ||| |||||| ||||||| |||||| |
|
|
| T |
28897403 |
aacttcaaaaacatcactggattgagtttgtgctcaaattgtatgacaaggagtacaagaaaataaaaacatgtcagagat |
28897483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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