View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15353_low_2 (Length: 513)
Name: NF15353_low_2
Description: NF15353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15353_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 22 - 265
Target Start/End: Original strand, 16660535 - 16660778
Alignment:
| Q |
22 |
cgaatttcactaatgtatttgattgaaggtaaaatgttctttgatcctaatattattcaattttaaaatgaaaatagtatcttatcctaaatttttatta |
121 |
Q |
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| T |
16660535 |
cgaatttcactaatgtatttggttgaaggtaaaatgttctttgatcctaatattattcaattttaaaatgaaaatagtaccttatcctaaatttttatta |
16660634 |
T |
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| Q |
122 |
gagaaaagacgtaagtatataattagttcctacaaataaatgtcatatgagtttttatccctaaacttactaaatctttttaaataaccattgtaaatat |
221 |
Q |
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| T |
16660635 |
gagaaaaggcgtaagtatataattagttcctacaaataaatgtcatatgagtttttatccctaaacttactaaatctttttaaataaccattgtaaatat |
16660734 |
T |
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| Q |
222 |
taataatttgagttttgatcatagcctgatttgattatttatag |
265 |
Q |
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| T |
16660735 |
taataatttgagttttgatcatagtctgatttgattatttatag |
16660778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 329 - 513
Target Start/End: Original strand, 16660843 - 16661027
Alignment:
| Q |
329 |
tcccgcgcaagggacatagaaaggaccgttgtcttaatgaagaaagggtttttgagtgtgacgagaatttaagcttcatttcacaataagaaaaccttaa |
428 |
Q |
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| T |
16660843 |
tcccgcgcaagggacatagaaaggaccgttgtcttaatgaagaaaaggtttttgagtgtgacgagaatttaagcttcatttcacaataagaaaaccttaa |
16660942 |
T |
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| Q |
429 |
tcattttcttttgatcatttgaaagaaagatcacatggcgagaaaacacgaagggcatgttgtgggcatagacctaggaacaaca |
513 |
Q |
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| T |
16660943 |
tcattttcttttgatcatttgaaagaaagatcacatggcgagaaaacacgaagggcatgttgtgggcatagacctaggaacaaca |
16661027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 21207875 - 21207827
Alignment:
| Q |
145 |
tagttcctacaaataaatgtcatatgagtttttatccctaaacttacta |
193 |
Q |
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| T |
21207875 |
tagtccctgcaaatatatgtcatttgagttttcatccctaaacttacta |
21207827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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