View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15353_low_3 (Length: 335)
Name: NF15353_low_3
Description: NF15353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15353_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 25740448 - 25740136
Alignment:
| Q |
11 |
tagtagcattttaaattcatggaaaatgagaatcaaagttgcattagatgctgcaaggggaattgagtacattcataactacgcggtaccaccgattatt |
110 |
Q |
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| T |
25740448 |
tagtagcattttaaattcatggaaaatgagaatcaaagttgcattagatgctgcaaggggaattgagtacattcataactacgcggtaccaccgattatt |
25740349 |
T |
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| Q |
111 |
catcgagatattaaatcctcaaacatacttctcgattcaaaatggaatgctagggtttccgacttcggattatcgttaatttggcaagaaaccgaacaag |
210 |
Q |
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| T |
25740348 |
catcgagatattaaatcctcaaacatacttcttgattcaaaatggaatgctagggtttccgacttcggattatcgttaatttggcaagaaaccgaacaag |
25740249 |
T |
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| Q |
211 |
attcaatgtcgaatataaaagcggtcggaaccgctggttacatagatcccgagtactatgttttgaatgttttaacaacaaaaagtgatgtttatggttt |
310 |
Q |
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| T |
25740248 |
attcaatgtcgaatataaaagcggtcggaaccgttggttacatagatcctgagtactatgttttaaatgttttaacaacaaaaagtgatgtttatggttt |
25740149 |
T |
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| Q |
311 |
aggtgttgtgatg |
323 |
Q |
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| T |
25740148 |
aggtgttgtgatg |
25740136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 31755144 - 31755082
Alignment:
| Q |
245 |
tggttacatagatcccgagtactatgttttgaatgttttaacaacaaaaagtgatgtttatgg |
307 |
Q |
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| T |
31755144 |
tggttatatcgatcccgagtactatggtttgaatttattaacagcaaagagtgatgtttatgg |
31755082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 35558568 - 35558474
Alignment:
| Q |
24 |
aattcatggaaaatgagaatcaaagttgcattagatgctgcaaggggaattgagtacattcataactacgcggtaccaccgattattcatcgaga |
118 |
Q |
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| T |
35558568 |
aattcttggaaaatgaggatcaaagtcgcattggatgcttcacgtggaattgagtatctccataattacgcagttccatcaataattcatcgaga |
35558474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 25372760 - 25372720
Alignment:
| Q |
99 |
ccaccgattattcatcgagatattaaatcctcaaacatact |
139 |
Q |
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| T |
25372760 |
ccaccggtgattcatagagatattaaatcctcaaacatact |
25372720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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