View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15354_high_3 (Length: 489)
Name: NF15354_high_3
Description: NF15354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15354_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 16 - 484
Target Start/End: Original strand, 12645661 - 12646129
Alignment:
| Q |
16 |
agtttgtaaagtgagctgaaaaattatccctacaggctgtgataacataaccgaatttcgtaatatcaaaccgtctagaaagaaaggcatatgcatattc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12645661 |
agtttgtaaagtgagctgaaaaattatccctacaggctgtgataacataaccgaatttcgtaatatcaaaccgtctagaaagaaaggcatatgcatattc |
12645760 |
T |
|
| Q |
116 |
catatttcaggagagagtcaggaggaaatatgaaaaaagggataggctttaatggagtagattgtcccacaagagaaaatttcgtgagagaatccttttc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
12645761 |
catatttcaggagagagtcaggaggaaatatgaaaaaagggataggctttaatggagtagattgtcccacaagagaaaatttcgtgagagaatccttctc |
12645860 |
T |
|
| Q |
216 |
cataattagataatgatggcttaatcgttcaatgatcataaatctattatattgactttctaccagaattaaattggtgctaattggtaattaaaacatt |
315 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12645861 |
cataattatataatgatggcttaatcgttcaatgatcataaatctattatattgactttctaccagaattaaattggtgctaattggtaattaaaacatt |
12645960 |
T |
|
| Q |
316 |
aatccattnnnnnnnnttaaaacaattaagtggtaattaattagtaatgaaagctgattaattttgtcggagaaaatataccaaaaatggaaaatattga |
415 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12645961 |
aatccattaaaaaaaattaaaacaattaagtggtaattaattagtaatgaaagctgattaattttgtcggagaaaatataccaaaaatggaaaatattga |
12646060 |
T |
|
| Q |
416 |
aaatatattccacggtttgcaactttgactcaacccaacaagcagtgtaatatatctcacttctgtgct |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12646061 |
aaatatattccacggtttgcaactttgactcaacccaacaagcagtgtaatatatctcacttctgtgct |
12646129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 350 - 484
Target Start/End: Original strand, 12651128 - 12651262
Alignment:
| Q |
350 |
aattaattagtaatgaaagctgattaattttgtcggagaaaatataccaaaaatggaaaatattgaaaatatattccacggtttgcaactttgactcaac |
449 |
Q |
| |
|
|||||||| ||||| |||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||| || |||||||| ||||||||||| |
|
|
| T |
12651128 |
aattaattggtaataaaagctgattcattttgtcagagaaaatataccaaaaatgaaaaatattaaaaatatattcaacagtttgcaattttgactcaac |
12651227 |
T |
|
| Q |
450 |
ccaacaagcagtgtaatatatctcacttctgtgct |
484 |
Q |
| |
|
||||||||||| | ||||||||||||||| ||||| |
|
|
| T |
12651228 |
ccaacaagcagagcaatatatctcacttcagtgct |
12651262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University