View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15354_low_1 (Length: 659)

Name: NF15354_low_1
Description: NF15354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15354_low_1
NF15354_low_1
[»] chr5 (2 HSPs)
chr5 (167-659)||(6564040-6564532)
chr5 (1-54)||(6563876-6563929)


Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 167 - 659
Target Start/End: Original strand, 6564040 - 6564532
Alignment:
Q  167 aagcatcacccatccttgaagtatcattaattacgcatagtagcagtttcactaagaaaaggaatttttctgtccttatctatgtctgtcaacaacattt 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6564040 aagcatcacccatccttgaagtatcattaattacgcatagtagcagtttcactaagaaaaggaatttttatgtccttatctatgtctgtcaacaacattt 6564139  T
Q  267 aattgttagcaatatgcatgtaacacagtaataaatatcattaaacatctcagttcagaatttgtttcattgttgtcatcattatcccatattggtactt 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6564140 aattgttagcaatatgcatgtaacacagtaataaatatcattaaacatctcagttcagaatttgtttcattgttgtcatcattatcccatattggtactt 6564239  T
Q  367 tacacaagcaacaactgtaacactttcattagtcattatatgaggtcgtatatgtaataccttaaacaaacctcgtccttctcatttgttttcaccttct 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  6564240 tacacaagcaacaactgtaacactttcattagtcattatatgaggtcgtatatgtaacaccttaaacaaacctcgtccttctcatttgttttcaccatct 6564339  T
Q  467 tcttccatattattttattatttgtataaaacaaaaaccattttttcttctttttcccgctccatgaattgtataaaacctttctcagtttctctttttc 566  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6564340 tcttccatatttttttattatttgtataaaacaaaaaccattttttcttctttttcccgctccatgaattgtataaaacctttctcagtttctctttttc 6564439  T
Q  567 tctgttgtttgtgaattattggttactgttttgcagattcactttatcagagttagcataactttgtgcatgtttttactacctttttctgct 659  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6564440 tctgttgtttgtgaattattggttactgttttgcagattcactttatcagagttagcataactttgtgcatgtttttactacctttttctgct 6564532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 6563876 - 6563929
Alignment:
Q  1 atgatgaggttcgactcctaaatacctcaattattaactttaataaatgtaatt 54  Q
    |||||||||||||| |||||||||||| ||||||||||||||| ||||||||||    
T  6563876 atgatgaggttcgaatcctaaataccttaattattaactttaaaaaatgtaatt 6563929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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