View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15354_low_11 (Length: 244)

Name: NF15354_low_11
Description: NF15354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15354_low_11
NF15354_low_11
[»] chr7 (2 HSPs)
chr7 (1-194)||(41688782-41688965)
chr7 (32-160)||(41681512-41681643)
[»] chr4 (4 HSPs)
chr4 (117-193)||(44668640-44668716)
chr4 (117-193)||(44687916-44687992)
chr4 (120-196)||(45088954-45089030)
chr4 (142-193)||(45095418-45095469)
[»] chr1 (10 HSPs)
chr1 (138-202)||(43983344-43983408)
chr1 (120-196)||(44004751-44004827)
chr1 (143-196)||(43986159-43986212)
chr1 (125-199)||(43908406-43908480)
chr1 (137-195)||(42414880-42414938)
chr1 (142-196)||(43917832-43917886)
chr1 (128-194)||(43990943-43991009)
chr1 (144-195)||(23682390-23682441)
chr1 (144-202)||(19567318-19567376)
chr1 (142-191)||(43993626-43993675)
[»] chr2 (6 HSPs)
chr2 (121-196)||(24002338-24002413)
chr2 (120-195)||(20596094-20596169)
chr2 (117-202)||(20575447-20575532)
chr2 (138-195)||(20585241-20585298)
chr2 (138-195)||(20603568-20603625)
chr2 (138-195)||(20895404-20895461)
[»] chr8 (3 HSPs)
chr8 (120-194)||(42694391-42694465)
chr8 (142-202)||(42700091-42700151)
chr8 (124-196)||(24041718-24041790)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 41688965 - 41688782
Alignment:
Q  1 tctgtattggatggatgataaaagaggtgttagtgttgctgcctcaaagtgatggtgactacatgtgcaaagatatgctgtatgttttgagtaattgtct 100  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||    
T  41688965 tctgaattggatggatgataaaagaggtgttactgttgctgcctcaaagtgatggtgactacatgtgcaaagatatgctgtatgtt--------ttgtct 41688874  T
Q  101 ttgtgtgtgnnnnnnnaacaaaactcattgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccct 194  Q
    ||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41688873 ttgtgtgt--ttttttaacaaaactcattgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccct 41688782  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 160
Target Start/End: Complemental strand, 41681643 - 41681512
Alignment:
Q  32 agtgttgctgcctcaaagtgatggtgactacatgtgcaaagatatgc---tgtatgttttgagtaattgtctttgtgtgtgnnnnnnnaacaaaactcat 128  Q
    ||||||| ||||||||||||| ||||||| | | | ||||||||||    || ||||||||||| || | |||||||||||       ||||| ||||||    
T  41681643 agtgttgttgcctcaaagtgacggtgacttcgtatacaaagatatgaatatgcatgttttgagtgatcgcctttgtgtgtgttttttgaacaagactcat 41681544  T
Q  129 tgggttgcatggttgatgaaagagtatagagt 160  Q
    |||||||  |||||||||||||||||| ||||    
T  41681543 tgggttgtgtggttgatgaaagagtatggagt 41681512  T

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Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 44668716 - 44668640
Alignment:
Q  117 aacaaaactcattgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccc 193  Q
    |||||||||||||||||||  ||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  44668716 aacaaaactcattgggttgtgtggatgatgaaagagtatggagttgttgagtcatggactaaactgatgatcatccc 44668640  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 44687992 - 44687916
Alignment:
Q  117 aacaaaactcattgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccc 193  Q
    |||||||||||||||||||  ||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  44687992 aacaaaactcattgggttgtgtggatgatgaaagagtatggagttgttgagtcatggactaaactgatgatcatccc 44687916  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 45089030 - 45088954
Alignment:
Q  120 aaaactcattgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctca 196  Q
    ||||||||||||||||  ||| |||||||||||||| ||||| ||||||| ||| |||||||||| |||||||||||    
T  45089030 aaaactcattgggttgtgtggatgatgaaagagtatggagttattgagtcgtgggctaaattgataatcatccctca 45088954  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 45095469 - 45095418
Alignment:
Q  142 tgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccc 193  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  45095469 tgatgaaagagtatggagttgttgagtcatggactaaaatgatgatcatccc 45095418  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 43983408 - 43983344
Alignment:
Q  138 tggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctcacgagaa 202  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||    
T  43983408 tggttgatgaaagagtatggagttgttgagtcatggactaaattcatgatcatccctcatgagaa 43983344  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 44004827 - 44004751
Alignment:
Q  120 aaaactcattgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctca 196  Q
    ||||||||||||  ||  ||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  44004827 aaaactcattggactgtgtggatgatgaaagagtatggagttgctgagtcatggactaaattgatgatcatccctca 44004751  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 43986212 - 43986159
Alignment:
Q  143 gatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctca 196  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  43986212 gatgaaagagtatggagttgttgagtcatggactaaattgatgattatccctca 43986159  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 199
Target Start/End: Original strand, 43908406 - 43908480
Alignment:
Q  125 tcattgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctcacga 199  Q
    ||||||| ||| |||| |||||||||||||| |||||| | ||||||||||||||||| | ||||||||||||||    
T  43908406 tcattggattgtatggatgatgaaagagtatggagttgctaagtcatggactaaattgtttatcatccctcacga 43908480  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 42414880 - 42414938
Alignment:
Q  137 atggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctc 195  Q
    ||||||||||||| ||||| |||||  |||||| |||||||||||||||||||||||||    
T  42414880 atggttgatgaaacagtatggagttactgagtcttggactaaattgatgatcatccctc 42414938  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 43917832 - 43917886
Alignment:
Q  142 tgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctca 196  Q
    |||||||||||| | ||||| ||||||||||||||||||| ||||||||||||||    
T  43917832 tgatgaaagagtgtggagtttttgagtcatggactaaattcatgatcatccctca 43917886  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 43991009 - 43990943
Alignment:
Q  128 ttgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccct 194  Q
    ||||||||  ||| |||||||||||||| |  || ||||||||||||||||||||||||||||||||    
T  43991009 ttgggttgtgtggatgatgaaagagtatggcattattgagtcatggactaaattgatgatcatccct 43990943  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 23682390 - 23682441
Alignment:
Q  144 atgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctc 195  Q
    |||||||||||| |||||| |||||||||||||  ||||| |||||||||||    
T  23682390 atgaaagagtatggagttgctgagtcatggactgtattgacgatcatccctc 23682441  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 19567376 - 19567318
Alignment:
Q  144 atgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctcacgagaa 202  Q
    |||||||||||| |||||| |||||||||||||| |||||  |||||| |||| |||||    
T  19567376 atgaaagagtatggagttgctgagtcatggactatattgacaatcatctctcatgagaa 19567318  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 43993675 - 43993626
Alignment:
Q  142 tgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatc 191  Q
    |||||||| ||||| ||||| ||||||||||||||||||| || ||||||    
T  43993675 tgatgaaatagtatggagtttttgagtcatggactaaattcataatcatc 43993626  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 24002338 - 24002413
Alignment:
Q  121 aaactcattgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctca 196  Q
    |||||||||||||||  ||| |||||||| ||||  ||||||||||||||||||| |||||||  |||||||||||    
T  24002338 aaactcattgggttgtgtggatgatgaaaaagtacggagttgttgagtcatggacaaaattgaaaatcatccctca 24002413  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 20596169 - 20596094
Alignment:
Q  120 aaaactcattgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctc 195  Q
    ||||||||||||| |   ||||| |||||| | ||| |||||| |||||||||||||| ||||||||| |||||||    
T  20596169 aaaactcattgggatttttggttaatgaaaaaatatggagttgctgagtcatggactagattgatgatgatccctc 20596094  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 20575532 - 20575447
Alignment:
Q  117 aacaaaactcattgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctcacgagaa 202  Q
    ||||||||||||| |||| ||||||||||||||   ||| || ||| ||| || |||||||  |||||||| |||||||| |||||    
T  20575532 aacaaaactcatttggtttcatggttgatgaaaatatatggaattgctgaatcttggactaggttgatgatgatccctcatgagaa 20575447  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 20585298 - 20585241
Alignment:
Q  138 tggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctc 195  Q
    ||||| |||||| | ||| |||||| |||||||||||||| ||||||||| |||||||    
T  20585298 tggttaatgaaaaaatatggagttgctgagtcatggactagattgatgatgatccctc 20585241  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 20603625 - 20603568
Alignment:
Q  138 tggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctc 195  Q
    ||||| |||||| | ||| |||||| |||||||||||||| ||||||||| |||||||    
T  20603625 tggttaatgaaaaaatatggagttgctgagtcatggactagattgatgatgatccctc 20603568  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 20895404 - 20895461
Alignment:
Q  138 tggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctc 195  Q
    ||||| |||||| | ||| |||||| |||||||||||||| ||||||||| |||||||    
T  20895404 tggttaatgaaaaaatatggagttgctgagtcatggactagattgatgatgatccctc 20895461  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 42694391 - 42694465
Alignment:
Q  120 aaaactcattgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccct 194  Q
    |||| |||||||| || |||| |||||||  | ||| |||||  |||||||||||||||||||||||||||||||    
T  42694391 aaaaatcattggggtgtatggatgatgaatcaatatggagttactgagtcatggactaaattgatgatcatccct 42694465  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 42700091 - 42700151
Alignment:
Q  142 tgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctcacgagaa 202  Q
    |||||||| | ||| |||||| |||||||||||||||||||||| |||| ||||| |||||    
T  42700091 tgatgaaacaatatggagttgctgagtcatggactaaattgatgttcattcctcatgagaa 42700151  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 24041790 - 24041718
Alignment:
Q  124 ctcattgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctca 196  Q
    ||||||||||||  ||| |||||||| || | || ||||||||||||||||| ||| |||  |||||||||||    
T  24041790 ctcattgggttgtgtggatgatgaaaaagaacagcgttgttgagtcatggacaaaactgaaaatcatccctca 24041718  T

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