View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15354_low_12 (Length: 228)

Name: NF15354_low_12
Description: NF15354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15354_low_12
NF15354_low_12
[»] chr8 (2 HSPs)
chr8 (142-228)||(17804967-17805053)
chr8 (11-127)||(17802545-17802662)


Alignment Details
Target: chr8 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 17804967 - 17805053
Alignment:
Q  142 tcacaaggtagaatgccaaatgaaaacatgttaaatgagtatagattgataaaagatgaattaaaagagtacatcaaagcctaggca 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17804967 tcacaaggtagaatgccaaatgaaaacatgttaaatgagtatagattgataaaagatgaattaaaagagtacatcaaagcctaggca 17805053  T

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Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 17802545 - 17802662
Alignment:
Q  11 atacatcgaacttgccaaccaaataaaattatggggtctactactttacatgtgcctccatgcatatatctgtttaaattattgttgtt-ccaatttcta 109  Q
    ||||||||||| || ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  17802545 atacatcgaacatggcaaccaaatcaaactatggggtctactactttacatgtgcctccatgcatatatctgtttaaattattattgttcccaatttcta 17802644  T
Q  110 gaatatgctagtataaat 127  Q
    ||||||||| ||||||||    
T  17802645 gaatatgctggtataaat 17802662  T

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