View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15354_low_2 (Length: 538)
Name: NF15354_low_2
Description: NF15354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15354_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 10 - 523
Target Start/End: Original strand, 43151796 - 43152311
Alignment:
| Q |
10 |
agcagcacagaccaagggaacaaatgtgattctccgagagacgaacaaatgtgagagacatgtgtgtgcggacatgagagagatgtgctagttgaaatgc |
109 |
Q |
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| T |
43151796 |
agcaacacaaaccaagggaacaaatgtgattctccgagagacgaacaaatgtgagagacatgtgtgtgcggacatgagagagatgtgctagttgaaatgc |
43151895 |
T |
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| Q |
110 |
caaacgacaagaaatgtgcaaagcgaaccagaaagaacaagaaacatgtagcatgaacacaagaca--gagaaatgtatgtttttctttgagttttctaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
43151896 |
caaacgacaagaaatgtgcaaagcgaaccagaaagaacaagaaacatgtagcatgaacacgagacaaagagaaatgtatgtttttctttgagttttctaa |
43151995 |
T |
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| Q |
208 |
cttctaaacgaaaaggacgtgtcttctaacttacttttagggtttttaattttgagtgaaacgacgagatccaacatgttttgttttttcttcaaaaatt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43151996 |
cttctaaacgaaaaggacgtgtcttctaacttacttttagggtttttaattttgagtgaaacgacgagatccaacatgttttgttttttcttcaaaaatt |
43152095 |
T |
|
| Q |
308 |
acattgaactcgtgaacttgcatcagacttgtgagtctatccgatttgaccgagtctacaatgaaaatgaatatcagtgcgcgtcaactcattttggcat |
407 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43152096 |
acattgaactcgtgagcttgcatcagacttgtgagtctatccgatttgaccgagtctacaatgaaaatgaatatcagtgcgcgtcaactcattttggcat |
43152195 |
T |
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| Q |
408 |
cctagacccgtaagctcctagaagtctatgagttgacctgcgagtctgacaaccatgttgtaatcnnnnnnngtattgatagttgatatccatgtacaca |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43152196 |
cctagacccgtaagctcctagaagtctatgagttgacctgcgagtctgacaaccatgttgtaatctttttttgtattgatagttgatatccatgtacaca |
43152295 |
T |
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| Q |
508 |
tacaatttgtggattg |
523 |
Q |
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|||||||||||||||| |
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| T |
43152296 |
tacaatttgtggattg |
43152311 |
T |
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