View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15354_low_4 (Length: 445)
Name: NF15354_low_4
Description: NF15354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15354_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 3704130 - 3703867
Alignment:
| Q |
18 |
tacttaacatcaaaggattttgttttgt---attatatgcaatgatgccta-ataaaggcatgtatcagacattagaaattgggtaaagggtgggtttat |
113 |
Q |
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| T |
3704130 |
tacttaacatctaaggattttgtttcgtcttattatatgtaatgatgcctatataaaggcatgtagcagacattagaaattgggtaa-gggtgcgtttat |
3704032 |
T |
|
| Q |
114 |
tttagcttaaaaaagattttgggctnnnnnnnntacagggataannnnnnnagagattttgcaactagaacctatagaaattttgaagtggacttatata |
213 |
Q |
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| T |
3704031 |
tttagcttaaaaaagattttgggctaaaaaaa-tacatggatacttttttaagagattttgcaactagaacttatagaaattttgaagtggacttatata |
3703933 |
T |
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| Q |
214 |
ttgactatgagttttttaacaaataacttgtaaaagttaaactcaaacttgaacattctacttata |
279 |
Q |
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| T |
3703932 |
ttgactatgagttttttaacaaataacttgtaaaagttaaattcaaactaggacattctacttata |
3703867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 325 - 432
Target Start/End: Complemental strand, 3679738 - 3679632
Alignment:
| Q |
325 |
ttcattctgctatctgttgtagcatgctttttggcataaagcttatatgaaaattatcgtttacttaaattatctccttcaatccatttgttggctcaag |
424 |
Q |
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| T |
3679738 |
ttcattctgctatctgttataacatgattcttggcataaagct-ataacaaaattactgtttacttaaattatctccttcaatccaattgttggctcaag |
3679640 |
T |
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| Q |
425 |
tttaatat |
432 |
Q |
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|||||||| |
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| T |
3679639 |
tttaatat |
3679632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 325 - 432
Target Start/End: Complemental strand, 3703823 - 3703712
Alignment:
| Q |
325 |
ttcattctgctatctgttgtag-catgctttttggcataaagcttatatgaaaattatcgtttacttaaattatctccttcaatccatttg---ttggct |
420 |
Q |
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|||||||||||||||||| || |||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| |||||| |
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| T |
3703823 |
ttcattctgctatctgttataaacatgatttttggcataaagcttataacaaaattaccgtttacttaaattatctccttcaatccaattgttattggct |
3703724 |
T |
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| Q |
421 |
caagtttaatat |
432 |
Q |
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|||||||||||| |
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| T |
3703723 |
caagtttaatat |
3703712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 3695413 - 3695351
Alignment:
| Q |
171 |
tttgcaactagaacctatagaaattttgaagtggacttatatattgactatgagttttttaac |
233 |
Q |
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| T |
3695413 |
tttgcaactagaacttatagatattttgaaatggacttatatattaactatgagttttttaac |
3695351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 381
Target Start/End: Complemental strand, 3675933 - 3675873
Alignment:
| Q |
325 |
ttcattctgctatctgttgtagcat----gctttttggcataaagcttatatgaaaattat |
381 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
3675933 |
ttcactctgctatctgttgtagcatacatgctttttggcataaagcttatatcaaaattat |
3675873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 278
Target Start/End: Complemental strand, 3676009 - 3675975
Alignment:
| Q |
244 |
taaaagttaaactcaaacttgaacattctacttat |
278 |
Q |
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| T |
3676009 |
taaaagttaaactcaaacttggacattctacttat |
3675975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 3650577 - 3650517
Alignment:
| Q |
170 |
ttttgcaac-tagaacctatagaaattttgaagtggacttatatattgactatgagttttt |
229 |
Q |
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||||||||| ||| || |||| |||| ||||| |||||||||||||||||||| ||||||| |
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| T |
3650577 |
ttttgcaacctaggacttatataaatattgaaatggacttatatattgactattagttttt |
3650517 |
T |
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