View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15354_low_5 (Length: 443)
Name: NF15354_low_5
Description: NF15354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15354_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 91 - 428
Target Start/End: Original strand, 34950779 - 34951115
Alignment:
| Q |
91 |
cttatctcacagacttacagttactacataataaaataaagtatgccagcgtggttcgtcacaacatgttttttcagctgcaacatacgttttgtccatt |
190 |
Q |
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| T |
34950779 |
cttatctcacagacttacagttactacataa---aataaagtatgccagcgtggttcgtcacaacatgttttttcagctgcaacatacgttctgtccatt |
34950875 |
T |
|
| Q |
191 |
ttgagttctgaattgaattcattctcattctcataacaattctctctctgaaatcaacactccctatattctttccgcgcgtttcgatcttcattcatta |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34950876 |
ttgagttctgaattgaattcattctcattctcataacaattctctctctgaaatcaacactccctatattctttccgcgcgtttcgatc----ttcatta |
34950971 |
T |
|
| Q |
291 |
tctaatggatccatttcaccaaaacgacgcttcttcatcttttccactgtcgtcgtctactcctcct------caacaacaacaacgcactttcttatat |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34950972 |
tctaatggatccatttcaccaaaacgacgcttcttcatcttttccactgtcgtcgtctactcctcctcaacaacaacaacaacaacgcactttcttatat |
34951071 |
T |
|
| Q |
385 |
tcacgttcctcttcttcttcttccaacgacaacgacgacgtttc |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34951072 |
tcacgttcctcttcttcttcttccaacgacaacgacgacgtttc |
34951115 |
T |
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