View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15354_low_6 (Length: 404)

Name: NF15354_low_6
Description: NF15354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15354_low_6
NF15354_low_6
[»] chr5 (7 HSPs)
chr5 (20-390)||(5663486-5663855)
chr5 (167-363)||(5664702-5664895)
chr5 (315-390)||(5046440-5046515)
chr5 (315-390)||(5047211-5047286)
chr5 (315-390)||(5047982-5048057)
chr5 (215-268)||(5046572-5046625)
chr5 (215-268)||(5047343-5047396)
[»] chr4 (7 HSPs)
chr4 (167-390)||(24853338-24853562)
chr4 (173-268)||(24856353-24856448)
chr4 (315-390)||(28787952-28788027)
chr4 (315-390)||(51246614-51246689)
chr4 (315-390)||(17525522-17525597)
chr4 (172-372)||(28787018-28787223)
chr4 (218-268)||(51246738-51246788)
[»] scaffold0406 (1 HSPs)
scaffold0406 (204-390)||(6272-6460)
[»] chr7 (1 HSPs)
chr7 (315-390)||(22622406-22622481)
[»] chr1 (3 HSPs)
chr1 (324-363)||(29371922-29371961)
chr1 (165-269)||(22056427-22056530)
chr1 (337-390)||(22055518-22055571)
[»] chr3 (2 HSPs)
chr3 (315-390)||(12739334-12739409)
chr3 (315-372)||(12738201-12738258)
[»] chr8 (1 HSPs)
chr8 (304-374)||(1275221-1275291)


Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 20 - 390
Target Start/End: Original strand, 5663486 - 5663855
Alignment:
Q  20 gtcatcataaaagtccacagaatcaattgcatcaggttacaattgcatcagagttgagacaccactaactagttctaattcacaaccattgcttgtctta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5663486 gtcatcataaaagtccacagaatcaattgcatcaggttacaattgcatcagagttgagacaccactaactagttctaattcacaac-attgcttgtctta 5663584  T
Q  120 agatgattcatcataggagtggcacccttcataacttatgagtatattgttagaaaatatatattgtgggagctagtggtacaatggttaatagcattgg 219  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  5663585 agatgattcatcataggagtggcacccttcataacttacgagtatattgttagaaaatatatattgtgggtgctagtggtacaatggttagtagcattgg 5663684  T
Q  220 acaagaagacacacattggtaaatagctcattgtagaaggagagaatatagtatatggaagcccttaatatattgtaattgtatttaaatgtttaaatac 319  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5663685 acaagaagacacacattgataaatagctcattgtagaaggagagaatatagtatatggaagcccttaatatattgtaattgtatttaaatgtttaaatac 5663784  T
Q  320 aatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 390  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5663785 aatcgcacccatataattctatttataagtgattgaagatgtttctaaaactagaagagtctaggcctttg 5663855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 167 - 363
Target Start/End: Original strand, 5664702 - 5664895
Alignment:
Q  167 tgttagaaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagagaat 266  Q
    |||||||||||||||| ||||| ||| ||| ||| | ||||   | ||||||||||||||| ||||||||||||| ||  | ||||||| ||||||||||    
T  5664702 tgttagaaaatatatagtgtggaagcaagttgtagagtggtatgtggcattggacaagaaggcacacattggtaattaatttattgtaggaggagagaat 5664801  T
Q  267 atagtatatggaagcccttaata-tattgtaattgtatttaaatgtttaaatacaatcgcacccatataattctatttataagtgcttgaagatgttt 363  Q
    ||  || | ||||||||| |||| |||||| |||||||||||| | || |||||||| |||||||||||| ||    |||| ||||||||||||||||    
T  5664802 atgatacagggaagccctcaatattattgtcattgtatttaaaagcttgaatacaattgcacccatataagtc----tataggtgcttgaagatgttt 5664895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 315 - 390
Target Start/End: Complemental strand, 5046515 - 5046440
Alignment:
Q  315 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 390  Q
    |||||||| |||| ||||||| |||||||||| ||||||| |||||||||||||||||||| | ||||||||||||    
T  5046515 aatacaattgcactcatataagtctatttataggtgcttgtagatgtttctaaaactagaataatctaggcctttg 5046440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 315 - 390
Target Start/End: Complemental strand, 5047286 - 5047211
Alignment:
Q  315 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 390  Q
    |||||||| |||| ||||||| | |||||||| ||||||| |||||||||||||||||||| | ||||||||||||    
T  5047286 aatacaattgcactcatataagtatatttataggtgcttgtagatgtttctaaaactagaataatctaggcctttg 5047211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 390
Target Start/End: Complemental strand, 5048057 - 5047982
Alignment:
Q  315 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 390  Q
    |||||||| |||| ||||||| | |||||||| ||||||| |||||||| ||||||||||| | ||||||||||||    
T  5048057 aatacaattgcactcatataagtatatttataggtgcttgtagatgtttttaaaactagaataatctaggcctttg 5047982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 5046625 - 5046572
Alignment:
Q  215 attggacaagaagacacacattggtaaatagctcattgtagaaggagagaatat 268  Q
    ||||||||| | ||||| ||||||||| ||||||||||||| ||||||||||||    
T  5046625 attggacaaaaggacacgcattggtaagtagctcattgtaggaggagagaatat 5046572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 5047396 - 5047343
Alignment:
Q  215 attggacaagaagacacacattggtaaatagctcattgtagaaggagagaatat 268  Q
    ||||||||| | ||||| ||||||||| ||||||||||||| ||||||||||||    
T  5047396 attggacaaaaggacacgcattggtaagtagctcattgtaggaggagagaatat 5047343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 167 - 390
Target Start/End: Complemental strand, 24853562 - 24853338
Alignment:
Q  167 tgttagaaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagagaat 266  Q
    |||||||||| ||||| ||| ||||||||||||  | || ||| ||||||||||||||| |||||| |||||||| ||||||||||||| |||| |||||    
T  24853562 tgttagaaaa-atatagtgtaggagctagtggtggagtgtttagtagcattggacaagaggacacatattggtaattagctcattgtaggaggaaagaat 24853464  T
Q  267 atagtatatggaagcccttaata-tattgtaattgtat-ttaaatgtttaaatacaatcgcacccatataattctatttataagtgcttgaagatgtttc 364  Q
    ||  |||   |||||| | |||| |||||  |||| || ||||| | || |||||||| ||| ||| |||| |||||||||| ||| | ||||||||||     
T  24853463 atgatatgatgaagccttcaatattattgacattgcatcttaaaggcttgaatacaattgcatccaaataagtctatttataggtgttagaagatgtttt 24853364  T
Q  365 taaaactagaagagtctaggcctttg 390  Q
    || |||||||| | | ||||||||||    
T  24853363 tagaactagaataatttaggcctttg 24853338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 173 - 268
Target Start/End: Complemental strand, 24856448 - 24856353
Alignment:
Q  173 aaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagagaatat 268  Q
    |||||||||||  |  |||||||||||  | || ||| ||||||||||||||| |||||| |||||||| ||||||||||||| ||||||||||||    
T  24856448 aaaatatatatcatatgagctagtggtggagtgtttagtagcattggacaagatgacacatattggtaattagctcattgtaggaggagagaatat 24856353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 315 - 390
Target Start/End: Complemental strand, 28788027 - 28787952
Alignment:
Q  315 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 390  Q
    |||||||| |||||||||||  |||||||||| ||| ||||||||||||||| |||||||| | ||||||||||||    
T  28788027 aatacaattgcacccatatatgtctatttataggtgtttgaagatgtttctagaactagaataatctaggcctttg 28787952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 315 - 390
Target Start/End: Complemental strand, 51246689 - 51246614
Alignment:
Q  315 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 390  Q
    |||||||| |||||||||||| |||| ||||| ||||||| ||||||||||| |||||||| | ||||||||||||    
T  51246689 aatacaattgcacccatataagtctacttataggtgcttgtagatgtttctagaactagaataatctaggcctttg 51246614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 390
Target Start/End: Original strand, 17525522 - 17525597
Alignment:
Q  315 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 390  Q
    ||||||||  ||| ||||||| |||||||||||| ||||| ||||||||||| |||||||| | ||||||||||||    
T  17525522 aatacaatttcacacatataagtctatttataagcgcttgtagatgtttctagaactagaataatctaggcctttg 17525597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 372
Target Start/End: Complemental strand, 28787223 - 28787018
Alignment:
Q  172 gaaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagagaatatagt 271  Q
    ||||| ||||| ||| ||||||| ||||| | |||||| |||||||| |||||| |||||||||| |||| || |||||| ||| |||||| |||||  |    
T  28787223 gaaaaaatatagtgtaggagctaatggtagagtggttagtagcattgaacaagaggacacacattagtaattacctcattataggaggagataatatgat 28787124  T
Q  272 ata-tgg--aagcccttaatatattgta-attgtatttaaatgt-ttaaatacaatcgcacccatataattctatttataagtgcttgaagatgtttcta 366  Q
    ||  |||  ||||| | |||||  | || |||| || |||| |  || |||||||| ||||| |||||  |||||||||| |||||||||||||||||||    
T  28787123 atggtggtgaagccttcaatattatatacattgcatctaaaaggcttgaatacaattgcaccaatatatgtctatttataggtgcttgaagatgtttcta 28787024  T
Q  367 aaacta 372  Q
     |||||    
T  28787023 gaacta 28787018  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 51246788 - 51246738
Alignment:
Q  218 ggacaagaagacacacattggtaaatagctcattgtagaaggagagaatat 268  Q
    |||||||| |||||||||| | || ||||||||||||| ||||||||||||    
T  51246788 ggacaagaggacacacattaggaattagctcattgtaggaggagagaatat 51246738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 204 - 390
Target Start/End: Complemental strand, 6460 - 6272
Alignment:
Q  204 tggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagagaatatagtatatggaagcccttaatat-attgtaattgta 302  Q
    |||||| ||||||||||||||| |||||||||| | || ||||||||| ||| |||||| |||||  | |   |||||| | ||||| ||||  |||| |    
T  6460 tggttagtagcattggacaagatgacacacattaggaattagctcattataggaggagataatatgattttgtgaagccttcaatattattgacattgca 6361  T
Q  303 ttt-aaatgtttaaatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 390  Q
    | | ||| | || ||||||||  ||||||||||| |||||||||| |||||||||| |||||||| |||||||| | ||||||||||||    
T  6360 tctcaaaggcttgaatacaatttcacccatataagtctatttataggtgcttgaagctgtttctagaactagaataatctaggcctttg 6272  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 390
Target Start/End: Original strand, 22622406 - 22622481
Alignment:
Q  315 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 390  Q
    |||||||| ||||||||||||  |||||||||||||| |||||||||||||| || ||||| | |||||| |||||    
T  22622406 aatacaattgcacccatataagcctatttataagtgcctgaagatgtttctagaattagaataatctaggtctttg 22622481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 363
Target Start/End: Complemental strand, 29371961 - 29371922
Alignment:
Q  324 gcacccatataattctatttataagtgcttgaagatgttt 363  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  29371961 gcacccatataaatctatttataagtgcttgaagatgttt 29371922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 269
Target Start/End: Original strand, 22056427 - 22056530
Alignment:
Q  165 attgttagaaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagaga 264  Q
    |||||| ||||| ||||| ||| ||||| | ||||| | | |||| ||||||||||||||| |||||| ||| |||| || |||||||||  ||||||||    
T  22056427 attgttggaaaa-atatagtgtaggagccaatggtagatttgttagtagcattggacaagaggacacatatttgtaattaactcattgtatgaggagaga 22056525  T
Q  265 atata 269  Q
    |||||    
T  22056526 atata 22056530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 22055518 - 22055571
Alignment:
Q  337 tctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 390  Q
    |||||||||||||||||||||||| ||||| ||||| || | |||||| |||||    
T  22055518 tctatttataagtgcttgaagatgattctagaactaaaataatctaggtctttg 22055571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 390
Target Start/End: Complemental strand, 12739409 - 12739334
Alignment:
Q  315 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 390  Q
    |||||||| ||| ||| |||||||||||||||  |||||| ||||||||||| ||||| || | ||||||| ||||    
T  12739409 aatacaattgcatccaaataattctatttatagatgcttgtagatgtttctagaactaaaataatctaggcttttg 12739334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 372
Target Start/End: Complemental strand, 12738258 - 12738201
Alignment:
Q  315 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaacta 372  Q
    |||||||| ||||||| |||| | |||||||| ||||||| ||||||||||| |||||    
T  12738258 aatacaattgcacccaaataagtttatttataggtgcttgtagatgtttctagaacta 12738201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 1275221 - 1275291
Alignment:
Q  304 ttaaatgtttaaatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactaga 374  Q
    ||||| |||| |||||||| |||||||||||  | || ||||| |||||||||| |||||||| |||||||    
T  1275221 ttaaacgtttgaatacaattgcacccatatacctatacttataggtgcttgaaggtgtttctagaactaga 1275291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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