View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15354_low_9 (Length: 256)
Name: NF15354_low_9
Description: NF15354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15354_low_9 |
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| [»] scaffold0328 (1 HSPs) |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: scaffold0328 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 10147 - 9909
Alignment:
| Q |
1 |
caaattaaaacacaattgtctgacaggacatgaccaaagcctacatggtgatgctatttcatatatagggcattaaggtatagttcaaacctatgaacta |
100 |
Q |
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| T |
10147 |
caaattaaaacacaattgtctgacaggacatgaccaaagcctacatggtgatgctatttcatatatagggcattaaggtatagttcaaacctatgaacta |
10048 |
T |
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| Q |
101 |
aaattaatcatgaatctccttatggatcctaaaattatccaagaatgatttcccttgtatcttgcttgaaaggtgtgctttcaagtaatctgcagcagca |
200 |
Q |
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| T |
10047 |
aaattaatcatgaatctccttatggatcctaaaattatccaagaatgatttcccttgtatcttgcttgaaaggtgtgctttcaagtaatctgcagcagca |
9948 |
T |
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| Q |
201 |
aatgttttgaacaatgcaggactttcaggagtcacaagg |
239 |
Q |
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| T |
9947 |
attgttttgaacaatgcaggactttcaggagtcacaagg |
9909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 238
Target Start/End: Original strand, 22962331 - 22962446
Alignment:
| Q |
123 |
tggatcctaaaattatccaagaatgatttcccttgtatcttgcttgaaaggtgtgctttcaagtaatctgcagcagcaaatgttttgaacaatgcaggac |
222 |
Q |
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| T |
22962331 |
tggatcctaacaccatccaagtatgatttcccatttatcttgcttgaaaggtatccattgacgtaatctgcaatagaaatggttttaaataatgcaggac |
22962430 |
T |
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| Q |
223 |
tttcaggagtcacaag |
238 |
Q |
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| T |
22962431 |
tttcaggagtaacaag |
22962446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 21264958 - 21264865
Alignment:
| Q |
145 |
atgatttcccttgtatcttgcttgaaaggtgtgctttcaagtaatctgcagcagcaaatgttttgaacaatgcaggactttcaggagtcacaag |
238 |
Q |
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| T |
21264958 |
atgatttcccttgtagcttgcgtgaaaagaatgctttgtagtaatcttccactgtaagtgttttgaacaatgcaggcctttcaagagtaacaag |
21264865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 22386 - 22479
Alignment:
| Q |
145 |
atgatttcccttgtatcttgcttgaaaggtgtgctttcaagtaatctgcagcagcaaatgttttgaacaatgcaggactttcaggagtcacaag |
238 |
Q |
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| T |
22386 |
atgatttcccttgtagcttgcgtgaaaagaatgctttgtagtaatcttctacagtaattgttttgaacaatgcaggcctttcaggagtaacaag |
22479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 239
Target Start/End: Original strand, 214808 - 214939
Alignment:
| Q |
108 |
tcatgaatctccttatggatcctaaaattatccaagaatgatttcccttgtatcttgcttgaaaggtgtgctttcaagtaatctgcagcagcaaatgttt |
207 |
Q |
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||||||||||| || | |||||||| | ||||||| |||| ||||| | ||||||||||| ||||| | | || | | |||||| || ||| | ||||| |
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| T |
214808 |
tcatgaatctcgtttttgatcctaagaacatccaagtatgacttcccctttatcttgcttgcaaggtatcccttgaggaaatctgaagtagccactgttt |
214907 |
T |
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| Q |
208 |
tgaacaatgcaggactttcaggagtcacaagg |
239 |
Q |
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|||| |||||||||||| |||||| |||||| |
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| T |
214908 |
tgaataatgcaggacttcgaggagtaacaagg |
214939 |
T |
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