View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15355_high_3 (Length: 359)
Name: NF15355_high_3
Description: NF15355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15355_high_3 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 6791368 - 6791178
Alignment:
| Q |
1 |
tatgagtatctcgctaacat-gagtgcattatacaaaatacattcattccacataaattgttgaattcgatgacttaatagcctgttaaaaacgttactt |
99 |
Q |
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||||||||| | |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
6791368 |
tatgagtatgttgctaacattgagtgtattatacaaaacacattcattccacataaattgttgaattcaatgacttaatagcctattaaaaacgttactt |
6791269 |
T |
|
| Q |
100 |
caattcataaacagattgttgcgtggtaaatcttcaaaagatcaattaactatactgcagtggtgattgtgtgaaattgatcatttgtact |
190 |
Q |
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| T |
6791268 |
caattcataaacagattgttgcgtggtaaatcttcaaaagatcaattaactatactgcagtggtgattgtgtgaaattgatcatttgtact |
6791178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 187 - 292
Target Start/End: Complemental strand, 6791133 - 6791028
Alignment:
| Q |
187 |
tactaatgttatacaatacattttctattattactacaccttgttcaagaatatttggtaaaaagtaatcatacctttgtgggaatatagctttcttagt |
286 |
Q |
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| T |
6791133 |
tactaatgttatacaatacatttgctattattgctacaccttgttcaataatatttggtaaaaagtaatcatacctttgtgggaatatagctttcttagc |
6791034 |
T |
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| Q |
287 |
atttca |
292 |
Q |
| |
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|||||| |
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| T |
6791033 |
atttca |
6791028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 6411578 - 6411413
Alignment:
| Q |
19 |
atgagtgcattatacaaaatacattcattccacataaattgttgaattcgatgacttaatagcctgttaaaaacgttacttcaattcataaacagattgt |
118 |
Q |
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|||| |||||||||||||| ||||||||| | |||||| ||| |||| || ||||||||||||| ||||||||||| |||||||||||||| |||||| |
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| T |
6411578 |
atgactgcattatacaaaacacattcatttcctataaatcgttaaatttgacgacttaatagcctaataaaaacgttatttcaattcataaactgattgt |
6411479 |
T |
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| Q |
119 |
tgcgtggtaaatcttcaaaagatcaatta----actatactgcagtggtgattgtgtgaaattgat |
180 |
Q |
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| T |
6411478 |
tgcatggtaaatcttcaaaaggtcaattaactaactatactgcagtggtgattgtgtgaaattgat |
6411413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 211 - 359
Target Start/End: Complemental strand, 6849321 - 6849171
Alignment:
| Q |
211 |
ctattattactacaccttgttcaagaatatttggtaaaaagtaatcatacctttgtgggaatatagctttcttagtatttcataaaaagtctcta-ctta |
309 |
Q |
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|||||||||||||||||| || |||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| | ||| |
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| T |
6849321 |
ctattattactacaccttttttaagaatatttcgtaaaaagtaatcataccttagtgggaatatagctttcttagcatttcataaaaagtctcgatatta |
6849222 |
T |
|
| Q |
310 |
aatgtcttt-acataaagattttgtgtcagtgagataattatatgttatct |
359 |
Q |
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| | ||| ||||||| | |||||| ||||||||||||||||||| |||| |
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| T |
6849221 |
agagcatttcacataaaaaatttgtgccagtgagataattatatgtgatct |
6849171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 220 - 357
Target Start/End: Original strand, 6938353 - 6938494
Alignment:
| Q |
220 |
ctacaccttgttcaagaatatttggtaaaaagtaat--catacctttgtgggaatatagctttcttagtatttcataaaaagtctcta-cttaaatgtct |
316 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||||| | ||||||||||||||| | ||||| | || |
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| T |
6938353 |
ctacaccttgtttaagaatatttggtaaaaagtaattatatatcttagtgggaatatagctttcttatgagttcataaaaagtctcgatattaaaagcct |
6938452 |
T |
|
| Q |
317 |
tt-acataaagattttgtgtcagtgagataattatatgttat |
357 |
Q |
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| T |
6938453 |
ttcacataaagattttgtgccagtgagatgattatatgttat |
6938494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 7604412 - 7604483
Alignment:
| Q |
106 |
ataaacagattgttgcgtggtaaatcttcaaaagatcaattaactatactgcagtggtgattgtgtgaaatt |
177 |
Q |
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|||||| |||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||||||||| |
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| T |
7604412 |
ataaactgattgttgcgcagtaaatcttcaaaaggtcaattaactatactgcagtcgtaattgtgtgaaatt |
7604483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 6789563 - 6789498
Alignment:
| Q |
294 |
aaaaagtctctacttaaatgtctttacataaagattttgtgtcagtgagataattatatgttatct |
359 |
Q |
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|||||||||| | ||| ||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6789563 |
aaaaagtctcgatttacatgcctttacataaagattttgtgccagtgagataattatatgttatct |
6789498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 212 - 333
Target Start/End: Original strand, 7604564 - 7604695
Alignment:
| Q |
212 |
tattattactacaccttgttcaagaatatttggtaaaaagt--------aatcatacctttgtgggaatatagctttcttag---tatttcataaaaagt |
300 |
Q |
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|||||||||||||||| ||| |||||||| ||||||||||| ||||||||||| || |||||||||||||||||| |||| ||| |||||| |
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| T |
7604564 |
tattattactacacctcgtttaagaatatctggtaaaaagttatcaactaatcatacctt-gtaggaatatagctttcttagcattattacatgaaaagt |
7604662 |
T |
|
| Q |
301 |
ctctacttaaatgtctttacataaagattttgt |
333 |
Q |
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|| | ||||||||||||||||||||||||||| |
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| T |
7604663 |
ttcgatttaaatgtctttacataaagattttgt |
7604695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 6411326 - 6411253
Alignment:
| Q |
211 |
ctattattactacaccttgttcaagaatatttggtaaaaagtaatcatacctttgtgggaatatagctttctta |
284 |
Q |
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|
|||||||||||||| |||||| ||||||||||||||||||||| | ||| || ||||||||||||||| |||| |
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| T |
6411326 |
ctattattactacatcttgtttaagaatatttggtaaaaagtagttatatctaggtgggaatatagcttactta |
6411253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 324 - 359
Target Start/End: Complemental strand, 6550429 - 6550394
Alignment:
| Q |
324 |
aagattttgtgtcagtgagataattatatgttatct |
359 |
Q |
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||||||||||| |||||||||||||||||||||||| |
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| T |
6550429 |
aagattttgtgccagtgagataattatatgttatct |
6550394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 7603253 - 7603308
Alignment:
| Q |
54 |
aaattgttgaattcgatgacttaatagcctgttaaaaacgttacttcaattcataa |
109 |
Q |
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||||| |||||||||||||||| |||||| ||||||| |||| |||||||||||| |
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|
| T |
7603253 |
aaattcttgaattcgatgacttcatagccaattaaaaatgttatttcaattcataa |
7603308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 211 - 303
Target Start/End: Complemental strand, 12429 - 12333
Alignment:
| Q |
211 |
ctattattactacaccttgttcaagaatatttggtaaaaagtaatcatac----ctttgtgggaatatagctttcttagtatttcataaaaagtctc |
303 |
Q |
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|||||||||||||||||| || |||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12429 |
ctattattactacaccttttttaagaatatttcgtaaaaagtaatcatacataccttagtgggaatatagctttcttagtatttcataaaaagtctc |
12333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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