View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15355_high_9 (Length: 201)
Name: NF15355_high_9
Description: NF15355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15355_high_9 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 29606679 - 29606879
Alignment:
| Q |
1 |
cctaaaattcaaccaccaccacatccacccaaaaaagcacctgcttctctaccaccattatctataccacctgtttcacttccaccattaccattaccac |
100 |
Q |
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| T |
29606679 |
cctaaaattcaaccaccaccacatccacccaaaaaagcacctgtttctctaccaccattatctataccacctgtttcacttccaccattaccattaccac |
29606778 |
T |
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| Q |
101 |
cagcttctaaaccaccaaaggtatccccagcacctgcaaaggttccaaaagcaccagcaccggccaaagaagcaccagcaccagcacctacacacaaaaa |
200 |
Q |
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| T |
29606779 |
cagcttctaaaccaccaaaggtatccccagcacctgcaaaggttccaaaagcaccagcaccggccaaagaagcaccagcaccagcacctacacacaaaaa |
29606878 |
T |
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| Q |
201 |
g |
201 |
Q |
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| T |
29606879 |
g |
29606879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 29606888 - 29606939
Alignment:
| Q |
150 |
agcaccagcaccggccaaagaagcaccagcaccagcacctacacacaaaaag |
201 |
Q |
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| T |
29606888 |
agcacccgcaccagacaaagaaacaccggcaccagcacctacacacaaaaag |
29606939 |
T |
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