View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15355_low_1 (Length: 687)
Name: NF15355_low_1
Description: NF15355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15355_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 83 - 680
Target Start/End: Complemental strand, 32145035 - 32144440
Alignment:
| Q |
83 |
aagttcaattttaactttcaaattgatagtgaatgaatacttgactagtttgtttaaaaattgttacgatgaaatttagtttttaacatgacatgaaacg |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32145035 |
aagttcaattttaactttcaaattgatagtgaatgaatacttgactagtttgtttaaaaattgttacgatgaaatttagtttt-aacatgacatgaaacg |
32144937 |
T |
|
| Q |
183 |
agggcaaaatttgtcttcaccgaaaacaataaattgcgacttaacatgcttctctagagaaataacacacaatttgtctttacatagttagcaatgtaat |
282 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32144936 |
agggcaaaatttgtcttcaccgaaaacaataaattgtgacttaacatgcttctctagagaaataacacacaatttgtctttacatagttagcactgtaat |
32144837 |
T |
|
| Q |
283 |
ggttagtgggagagttagatagnnnnnnnnnngttcgggtggaccaaataatctataatatataaatacaannnnnnnnagggtggaggatnnnnnnnnn |
382 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
32144836 |
ggttagtgggagagttagatag-aaaaaaaaagttcgggtggactaaataatctataatatataaatacaattttttttagggtggaggataaaaaaaaa |
32144738 |
T |
|
| Q |
383 |
caaaatttatgttgtaataagcattaaacataaag-nnnnnnnaaaggcattaagaataaagttgatcatcaaaatattacactatatacttcaaaaatt |
481 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32144737 |
taaaa-ttatgttgtaataagcattaaacataaagttttttttaaaggcattaagaataaagttgatcatcaaaatattacactatatactttaaaaatt |
32144639 |
T |
|
| Q |
482 |
taaaataattctctacgcgatccaaatggtctaaaagtgtgaccgtaatatgtaccgagatagtgggttcacaagataatttattttagaccagcggtat |
581 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |||||||| |
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| T |
32144638 |
taaaataattctctacgcgatccaaatgatctgaaagtgtgaccgtaatgtgtaccgagataatgggtccacaagataatttattttagactagcggtat |
32144539 |
T |
|
| Q |
582 |
tttaataccactattaatggtaatggctgaataataagattttgtttcgatacataaaaaagtctcacattacttaagaatcaagtctaagaataatct |
680 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
32144538 |
tttagtaccactggtaatggtaatggctgaataataagattttgtttcggtacataaaaaagtctcacattacataagaatcaaatctaagaataatct |
32144440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 32146195 - 32146147
Alignment:
| Q |
18 |
gtttaagaccaaaatcaataatatgcaaaataatgccaaaattaagata |
66 |
Q |
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| T |
32146195 |
gtttaagaccaaaatcaataatatgcaaaataatgccaaaattaagata |
32146147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 417
Target Start/End: Original strand, 51810257 - 51810290
Alignment:
| Q |
384 |
aaaatttatgttgtaataagcattaaacataaag |
417 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
51810257 |
aaaatttatgttataataagcattaaacataaag |
51810290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 624 - 661
Target Start/End: Original strand, 4672271 - 4672308
Alignment:
| Q |
624 |
tgtttcgatacataaaaaagtctcacattacttaagaa |
661 |
Q |
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||||||||||||||||||||||||||||| || ||||| |
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| T |
4672271 |
tgtttcgatacataaaaaagtctcacattgctaaagaa |
4672308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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