View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15355_low_10 (Length: 323)
Name: NF15355_low_10
Description: NF15355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15355_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 48011361 - 48011180
Alignment:
| Q |
11 |
actttacctagataaacatagtagagtatatgcactctcgtggtcttctacatcgacgagatgtaaaggccgaaaacattttaatgggtttggaccataa |
110 |
Q |
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| T |
48011361 |
actttacctagataaacatagtggagtatatgcactctcgtggtcttctacatcgacgtgatgtaaaggccgaaaacattttaatgggtttggaccataa |
48011262 |
T |
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| Q |
111 |
tgaaaacaagatatctaatgcatcaaaaaatttctgcattatttcccggcacatatctgctaggagtttaaagatttgtgat |
192 |
Q |
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| T |
48011261 |
tgaaaacaagatatctaatacatcaaaaaatttctgcattatttcccggcacatatctgctaggagtttaaagatttgtgat |
48011180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 240 - 323
Target Start/End: Complemental strand, 48011132 - 48011049
Alignment:
| Q |
240 |
taatgtcacattgttaaatgtttatatttttatcagaaaacaagaaatggaaatagactgtagtaacggaaactatgtaggcct |
323 |
Q |
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| T |
48011132 |
taatgtcacattgttaaatgtttatatttttatcagaaaacaagaaatggaaatagactgtagtaacggaaactatgtaggcct |
48011049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 15794507 - 15794561
Alignment:
| Q |
11 |
actttacctagataaacatagtagagtatatgcactctcgtggtcttctacatcg |
65 |
Q |
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| T |
15794507 |
actttacctagataaacagagtagagtatatgcactctcggggttttctgcatcg |
15794561 |
T |
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