View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15355_low_11 (Length: 312)

Name: NF15355_low_11
Description: NF15355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15355_low_11
NF15355_low_11
[»] chr4 (1 HSPs)
chr4 (19-312)||(55342142-55342435)


Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 55342142 - 55342435
Alignment:
Q  19 aaggcggtgatgcttgaagcatgagaagatatgaaatccaaggagtatacatgtaattaactccaatatgatgtgcaaactcatcattcactgcattaaa 118  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  55342142 aaggcggtgatgcttgcagcatgagaagatatgaaatccaaggagtatacatgtagttaactccaatatgatgtgcaaactcatcattcactgcattaaa 55342241  T
Q  119 gtgcaagatggacttgagcatataaagaaaagacaaggtggctgcaatgagtactgcaagacaccaaagtaatagataagcaacagaaggcatgaaatta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55342242 gtgcaagatggacttgagcatataaagaaaagacaaggtggctgcaatgagtactgcaagacaccaaagtaatagataagcaacagaaggcatgaaatta 55342341  T
Q  219 aatccatgccaaagagtttgtgattcattgttatgttcacttaaactcttccatagcaaagcttgagcaccaaaggaaacacaaatgaaaaagt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55342342 aatccatgccaaagagtttgtgattcattgttatgttcacttaaactcttccatagcaaagcttgagcaccaaaggaaacacaaatgaaaaagt 55342435  T

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