View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15355_low_12 (Length: 289)
Name: NF15355_low_12
Description: NF15355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15355_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 5 - 272
Target Start/End: Complemental strand, 44628466 - 44628198
Alignment:
| Q |
5 |
aggagcagagaatcagaatgaaatttgaagacaaaaaaggtcaagttaaattctataggggattatgtctccctagctttaactagaaagtgactattta |
104 |
Q |
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| T |
44628466 |
aggagcagaaaatcagaatgaaatttgaagacaaaaaaggtcaagttaaattctataggggattatgtctccctagctttaactagaaagtgactattta |
44628367 |
T |
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| Q |
105 |
tcagcattacgctttcagcatttagcaatttgacgataaacactaacaccatcaaagcatactgattcaatctaaatacatgtgtagtgatcaaacattt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44628366 |
tcagcattacgctttcagcatttagcaatttgacgataaacactaacaccattaaagcatactgattcaatctaaatacatgtgtagtgatcaaaggttt |
44628267 |
T |
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| Q |
205 |
cttgttccactgcatttgattccataacatgtccaatctaaaagaata-aaaacaattaccaaagtctt |
272 |
Q |
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| T |
44628266 |
cttgttccactgcatttgattccataacatgtccaatctaaaagaataaaaaacaattaccaaagtctt |
44628198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 257
Target Start/End: Original strand, 42388496 - 42388592
Alignment:
| Q |
162 |
catactgattcaatctaaatacatgtgtagtgatcaaa--catttcttgttccactgcatttgattccataacatgtccaatctaaaagaataaaaac |
257 |
Q |
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| T |
42388496 |
cataccgattcaatctaaa-acaagtgtagttatcacaagcatgtttcgttccactgcatttgattccttaacatgtccaatctaaaagaagaaaaac |
42388592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 162 - 273
Target Start/End: Original strand, 34597432 - 34597546
Alignment:
| Q |
162 |
catactgattcaatctaaatacatgtgtagtgatcaaa--catttcttgttccactgcatttgattccataacatgtccaatctaaaagaataaaaa-ca |
258 |
Q |
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||||| ||||||||||||| ||| ||||||| |||| | ||| | |||||||||||||||||||||| |||||||||||||||||||||| ||||| || |
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| T |
34597432 |
cataccgattcaatctaaaaacaagtgtagttatcacaagcatgttttgttccactgcatttgattccttaacatgtccaatctaaaagaagaaaaacca |
34597531 |
T |
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| Q |
259 |
attaccaaagtcttt |
273 |
Q |
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| T |
34597532 |
aataccaaaggcttt |
34597546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 273
Target Start/End: Complemental strand, 26081640 - 26081532
Alignment:
| Q |
168 |
gattcaatctaaatacatgtgtagtgatcaaa--catttcttgttccactgcatttgattccataacatgtccaatctaaaagaataaaaa-caattacc |
264 |
Q |
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||||||||||||| ||| || ||||||||| | ||||| |||||||| || |||||||||| ||||||||||||||||||||| ||||| |||||||| |
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| T |
26081640 |
gattcaatctaaaaacaagtttagtgatcacaagcattttttgttccaatggatttgattccttaacatgtccaatctaaaagacgaaaaaccaattacc |
26081541 |
T |
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| Q |
265 |
aaagtcttt |
273 |
Q |
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|||| |||| |
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|
| T |
26081540 |
aaaggcttt |
26081532 |
T |
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