View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15355_low_16 (Length: 227)

Name: NF15355_low_16
Description: NF15355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15355_low_16
NF15355_low_16
[»] chr3 (5 HSPs)
chr3 (12-221)||(1448380-1448589)
chr3 (35-221)||(1426288-1426478)
chr3 (1-115)||(1471762-1471876)
chr3 (117-220)||(1470865-1470971)
chr3 (1-44)||(1426729-1426772)
[»] chr4 (3 HSPs)
chr4 (90-220)||(10776187-10776320)
chr4 (150-201)||(17668113-17668164)
chr4 (84-201)||(1212097-1212214)
[»] chr7 (1 HSPs)
chr7 (84-220)||(43793800-43793940)
[»] chr2 (2 HSPs)
chr2 (84-192)||(876529-876637)
chr2 (74-114)||(3308220-3308260)
[»] chr6 (2 HSPs)
chr6 (91-195)||(9369197-9369301)
chr6 (63-143)||(17222466-17222546)
[»] chr5 (2 HSPs)
chr5 (72-220)||(31502814-31502966)
chr5 (62-196)||(17212618-17212748)
[»] chr1 (1 HSPs)
chr1 (125-220)||(40419097-40419194)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 1448589 - 1448380
Alignment:
Q  12 tgtttataaattttaattttcaatatgcatatctagtgatatcgtaaaaagtggagacctcgaagatttcttcataataataggatagcactaaggttca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  1448589 tgtttataaattttaattttcaatatgcatatctagtgatatcataaaaagtggagaccccgaagattttttcataataataggatagcactaaggttca 1448490  T
Q  112 acatcaagacctcatcttttcatcttagttttggaataacttacgaaacacatccaagaacgagcacaaagatgtatgctttttgaagatatagtcctac 211  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1448489 acattaagacctcatcttttcatcttagttttggaataacttacgaaacacatccaagaacgagcacaaagatgtatgcgttttgaagatatagtcctac 1448390  T
Q  212 ttggagagta 221  Q
    ||||||||||    
T  1448389 ttggagagta 1448380  T

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Target: chr3; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 35 - 221
Target Start/End: Complemental strand, 1426478 - 1426288
Alignment:
Q  35 tatgcatatctagtgatatcgtaaaaagtggagacctcgaagatttcttc-ataataataggatagcactaaggttcaacatcaagacctcatcttttca 133  Q
    |||| ||||||||||||||||||||||||| || || | ||||||| ||  |||||||||| |||| ||||||||||||||| |||||||||||||||||    
T  1426478 tatgtatatctagtgatatcgtaaaaagtgaaggccacaaagattttttttataataatagaatagtactaaggttcaacattaagacctcatcttttca 1426379  T
Q  134 tcttagttttggaataacttacgaaacacatccaagaacgagcacaaagatgtatgcttttt---gaagatatagtcctacttggagagta 221  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||| ||||||   ||||||||  ||||||||||||||||    
T  1426378 tcttagttttggaattacttatgaaacacatccaagagcgagcacaaaggtgtatactttttgcagaagatattatcctacttggagagta 1426288  T

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Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 1471876 - 1471762
Alignment:
Q  1 tctttactatatgtttataaattttaattttcaatatgcatatctagtgatatcgtaaaaagtggagacctcgaaga-tttcttcataataataggatag 99  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| ||| ||||||||||||||||||    
T  1471876 tctttactatatctttataaattttaattttcaatatgcatatctagtgatatcgt-aaaagtggagaccccaaagatttttttcataataataggatag 1471778  T
Q  100 cactaaggttcaacat 115  Q
    || |||| ||||||||    
T  1471777 cattaagtttcaacat 1471762  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 117 - 220
Target Start/End: Complemental strand, 1470971 - 1470865
Alignment:
Q  117 aagacctcatcttttcatcttagttttggaataacttacgaaacacatccaagaacgagcacaaagatgtatgctttt---tgaagatatagtcctactt 213  Q
    |||| ||||| ||||||| | ||||||| ||| ||||||| ||||||| ||||| ||||||||||| |||||| ||||    ||||||||||||||||||    
T  1470971 aagagctcatgttttcatttgagttttgaaattacttacggaacacattcaagagcgagcacaaagttgtatgtttttcacagaagatatagtcctactt 1470872  T
Q  214 ggagagt 220  Q
    |||||||    
T  1470871 ggagagt 1470865  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 1426772 - 1426729
Alignment:
Q  1 tctttactatatgtttataaattttaattttcaatatgcatatc 44  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  1426772 tctttactatatgtttataaattttaattttcaatatgtatatc 1426729  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 90 - 220
Target Start/End: Complemental strand, 10776320 - 10776187
Alignment:
Q  90 aataggatagcactaaggttcaacatcaagacctcatcttttcatcttagttttggaataacttacgaaacacatccaagaacgagcacaaagatgtatg 189  Q
    |||||||| |||| ||||||||||| |||| ||| |||||||||| |||||||||||   ||||||| ||||||| ||||| ||  ||| ||||||||||    
T  10776320 aataggattgcaccaaggttcaacaccaagcccttatcttttcattttagttttggatgtacttacggaacacattcaagagcggacaccaagatgtatg 10776221  T
Q  190 cttttt---gaagatatagtcctacttggagagt 220  Q
    ||||||   || ||||||||||||| ||||||||    
T  10776220 ctttttgcagatgatatagtcctacatggagagt 10776187  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 17668164 - 17668113
Alignment:
Q  150 acttacgaaacacatccaagaacgagcacaaagatgtatgctttttgaagat 201  Q
    ||||||||||||||||||| ||| ||||| ||||||||||  ||||||||||    
T  17668164 acttacgaaacacatccaacaactagcaccaagatgtatgtgttttgaagat 17668113  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 201
Target Start/End: Complemental strand, 1212214 - 1212097
Alignment:
Q  84 cataataataggatagcactaaggttcaacatcaagacctcatcttttcatcttagttttggaataacttacgaaacacatccaagaacgagcacaaaga 183  Q
    ||||| |||||||| |||| ||||||||||   ||| ||| |||||||||  |||||||||||   ||||||  |||||||| ||||   |||||  |||    
T  1212214 cataacaataggattgcaccaaggttcaaccctaagtccttatcttttcactttagttttggatgtacttacataacacatctaagagttagcaccgaga 1212115  T
Q  184 tgtatgctttttgaagat 201  Q
    ||||||||||||| ||||    
T  1212114 tgtatgctttttggagat 1212097  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 84 - 220
Target Start/End: Complemental strand, 43793940 - 43793800
Alignment:
Q  84 cataataataggatagcactaaggttcaacatcaagacctcatcttttcatcttagttttggaataacttacgaaacacatccaagaacgagcacaaaga 183  Q
    ||||| |||| ||| |||| |||||| ||||  ||| ||| ||||||||| |||||| |||||   |||||| |||||||||||||| ||||||| ||||    
T  43793940 cataacaataagattgcaccaaggttgaacactaagcccttatcttttcaccttagtgttggatgtacttacaaaacacatccaagagcgagcaccaaga 43793841  T
Q  184 tgtatgctttttg----aagatatagtcctacttggagagt 220  Q
    ||||||||||||     | ||||||||||||||||||||||    
T  43793840 tgtatgcttttttgcaaatgatatagtcctacttggagagt 43793800  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 84 - 192
Target Start/End: Original strand, 876529 - 876637
Alignment:
Q  84 cataataataggatagcactaaggttcaacatcaagacctcatcttttcatcttagttttggaataacttacgaaacacatccaagaacgagcacaaaga 183  Q
    ||||| || ||||| |||| |||||||||||  ||| ||| ||||||||| ||| ||||||||   ||||||| ||||||||||||| ||||||| ||||    
T  876529 cataacaacaggattgcaccaaggttcaacactaagcccttatcttttcaccttcgttttggatgtacttacggaacacatccaagagcgagcaccaaga 876628  T
Q  184 tgtatgctt 192  Q
    |||||||||    
T  876629 tgtatgctt 876637  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 3308220 - 3308260
Alignment:
Q  74 aagatttcttcataataataggatagcactaaggttcaaca 114  Q
    ||||||| |||||||||||||||| |||| |||||||||||    
T  3308220 aagattttttcataataataggattgcaccaaggttcaaca 3308260  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 195
Target Start/End: Complemental strand, 9369301 - 9369197
Alignment:
Q  91 ataggatagcactaaggttcaacatcaagacctcatcttttcatcttagttttggaataacttacgaaacacatccaagaacgagcacaaagatgtatgc 190  Q
    ||||||| |||| || |||||| ||  || ||| ||||||||| ||||||||||||   ||||||||||||||||||| | ||||||| ||||||||||     
T  9369301 ataggattgcaccaaagttcaatattgagtccttatcttttcaccttagttttggatgtacttacgaaacacatccaaaagcgagcaccaagatgtatgt 9369202  T
Q  191 ttttt 195  Q
    |||||    
T  9369201 ttttt 9369197  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 17222546 - 17222466
Alignment:
Q  63 tggagacctcgaagatttcttcataataataggatagcactaaggttcaacatcaagacctcatcttttcatcttagtttt 143  Q
    ||||||| ||||||||||  |||||| |||| ||| |||  |||||||||||  ||| ||| | |||||||||||||||||    
T  17222546 tggagacgtcgaagattttctcataacaatatgattgcaacaaggttcaacactaagccctaaacttttcatcttagtttt 17222466  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 220
Target Start/End: Complemental strand, 31502966 - 31502814
Alignment:
Q  72 cgaagatttcttcataataataggatagcactaaggttcaacatcaagacctcatcttttcatcttagttttggaataacttacgaaacacatccaag-a 170  Q
    ||||||||||  | ||| |||||||| | || |||||||||||  | | ||| ||||||||| |||| |||||||   |||||| ||||| ||||||| |    
T  31502966 cgaagatttccccttaacaataggattgtaccaaggttcaacactacgtccttatcttttcaccttaattttggatgtacttacaaaacaaatccaagaa 31502867  T
Q  171 acgagcacaaagatgtatgctttttgaagat---atagtcctacttggagagt 220  Q
    |||||||| |||||| |||||||||| ||||   |||||| ||||||||||||    
T  31502866 acgagcaccaagatgcatgctttttgcagatgagatagtcttacttggagagt 31502814  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 196
Target Start/End: Original strand, 17212618 - 17212748
Alignment:
Q  62 gtggagacctcgaagatttcttcataataataggatagcactaaggttcaacatcaagacctcatcttttcatcttagttttggaataacttacgaaaca 161  Q
    ||||||||| ||| ||||| ||||||| |||||||| |||  ||| |||||||  ||| | | ||||||||||| |||||||||    |  |||| ||||    
T  17212618 gtggagaccacgatgattttttcataaaaataggattgcatcaagcttcaacactaagccatgatcttttcatcatagttttgg----atgtacggaaca 17212713  T
Q  162 catccaagaacgagcacaaagatgtatgctttttg 196  Q
    | || |||| ||||||||| |||| ||||||||||    
T  17212714 cgtctaagagcgagcacaaggatgcatgctttttg 17212748  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 220
Target Start/End: Original strand, 40419097 - 40419194
Alignment:
Q  125 atcttttcatcttagttttggaataacttacgaaacacatccaagaacgagcacaaagatgtatgctttttg--aagatatagtcctacttggagagt 220  Q
    ||||||||| ||||||||||||   ||||||| |||||||||||||  || ||| |||| || |||||||||  | ||| |||||||||||| |||||    
T  40419097 atcttttcaccttagttttggatgtacttacggaacacatccaagagtgatcaccaagacgtgtgctttttgttatgatgtagtcctacttgaagagt 40419194  T

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