View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15355_low_2 (Length: 591)
Name: NF15355_low_2
Description: NF15355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15355_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 41 - 575
Target Start/End: Complemental strand, 46766199 - 46765665
Alignment:
| Q |
41 |
aatattataaagaaaagcttgggacccccttttggggcagggtcatgtttgcttagggtcctgcacatagnnnnnnnnnnnnctatttgtatgttgtatt |
140 |
Q |
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| T |
46766199 |
aatattataaagaaaagcttgggacccc-ttttggggcagggtcatgtttgcttagggtcctgcacatagttttttgtttttctatttgtatgttgtatt |
46766101 |
T |
|
| Q |
141 |
tgaatgagcttatnnnnnnnnnnnnnn-gtacaaacactaagttgcttaatttccactatcttaaaatcatgattatgagagtctataagggatagaaaa |
239 |
Q |
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| T |
46766100 |
tgaatgagcttataaaaagaaaaaaaaagtacaaacactaagttgcttaatttccactatcttaaaatcatgattatgagagtctataagggatagaaaa |
46766001 |
T |
|
| Q |
240 |
ggtacttgaatatggatggacacgtctcctgttcaaccttcccttctttagaaaaagtttagttcagtatatccaccggaatatggcaaaagttcgtcca |
339 |
Q |
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| T |
46766000 |
ggtacttgaatatggatggacacgtctcctgttcaaccttcccttctttagaaaaagtttagttcagtatatccaccggaatatggcaaaagttcgtcca |
46765901 |
T |
|
| Q |
340 |
actcaattcttgactgagaacaactcatacttttcttcaattttccgtgaggtgactcaacctcagcccaaaatatgccataaacaggtcggtggtctga |
439 |
Q |
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| T |
46765900 |
actcaattcttgactgagaacaactcatacttttcttcaattttccgtgaggtgactcaacctcagcccaaaatatgccataaacaggtcggtggtctga |
46765801 |
T |
|
| Q |
440 |
aaatcttgattcaccgcgaacataagacaattgatggagtccttctccataccatagaatacggtcacacctataaaaagaaaaatgttcatgtcttcgt |
539 |
Q |
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| T |
46765800 |
aaatcttgattcaccgcgaacataagacaattgatggagtccttctccataccatagaatacggtcacacctataaaaagaaaaatgttcatgtcttcgt |
46765701 |
T |
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| Q |
540 |
aggttgtaacagtttaataaaattatatcatatatc |
575 |
Q |
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| T |
46765700 |
aggttgtaacagtttaataaaattatatcatatatc |
46765665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 287 - 514
Target Start/End: Complemental strand, 1086291 - 1086064
Alignment:
| Q |
287 |
ttagaaaaagtttagttcagtatatccaccggaatatggcaaaagttcgtccaactcaattcttgactgagaacaactcatacttttcttcaattttccg |
386 |
Q |
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||||||||||||||| ||||| ||||| |||||||| |||||||| |||| | ||||| || ||||||| ||||||||||||||||||||||| |
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| T |
1086291 |
ttagaaaaagtttagctcagtgtatccgtgagaatatggtaaaagttcctccacttggattctggaacgagaacagctcatacttttcttcaattttcca |
1086192 |
T |
|
| Q |
387 |
tgaggtgactcaacctcagcccaaaatatgccataaacaggtcggtggtctgaaaatcttgattcaccgcgaacataagacaattgatggagtccttctc |
486 |
Q |
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|| |||||||||||| |||||||||| ||||||||| |||| ||||||||||||||| ||||| ||||| || ||||| | |||| | || ||||||| |
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| T |
1086191 |
tggtttgactcaacctcggcccaaaataagccataaaccggtctgtggtctgaaaatctcgattctccgcgtacgtaagatatttgacgtagaccttctc |
1086092 |
T |
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| Q |
487 |
cataccatagaatacggtcacacctata |
514 |
Q |
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||| ||| | |||||||||||||||||| |
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| T |
1086091 |
catgccacaaaatacggtcacacctata |
1086064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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