View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15355_low_4 (Length: 472)
Name: NF15355_low_4
Description: NF15355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15355_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 71 - 455
Target Start/End: Original strand, 482895 - 483279
Alignment:
| Q |
71 |
gcttcgaacaagaagctaactaactcaaaacctgagcttggtgaagaaccatctgttcttcccggttttgaacctttcttcgaacctcttcttggcctcc |
170 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
482895 |
gcttcgaacaagaagctaactaactcaaaacctgagcttggtgaagaaccatctgttcttcccggttttgaacctttcttcgaacctcttcttggcctcc |
482994 |
T |
|
| Q |
171 |
ttcaaagcagtaaccttcttatccttactctgaagaacatcagtggtaacaacctccttcaaatccacatcaagagtgtaacgtgttggcataagatgct |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
482995 |
ttcaaagcagtaaccttcttatccttactctgaagaacatcagtggtaacaacctccttcaaatccacatcaagagtgtaacgtgttggcataagatgct |
483094 |
T |
|
| Q |
271 |
gatagttaaccaacttaacaaatgccttaacacgcgatttcttcgcagttttcttagctgaatccttcttgatcaccttagctggatacttcttgatccc |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
483095 |
gatagttaaccaacttaacaaatgccttaacacgcgatttcttagcagttttcttagctgaatccttcttgatcaccttagctggatacttcttgatccc |
483194 |
T |
|
| Q |
371 |
tgcaaccaagcaatgaccgtaagcacgttcacgggttccatcatcaaagttcttcacgatcacagcctttttgccagcgtaacgt |
455 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
483195 |
tgcaaccaagcaatgaccataagcacgttcacgggttccatcatcaaagttcttcacgatcacagcctttttgccagcgtaacgt |
483279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 95 - 430
Target Start/End: Complemental strand, 15235587 - 15235252
Alignment:
| Q |
95 |
tcaaaacctgagcttggtgaagaaccatctgttcttcccggttttgaacctttcttcgaacctcttcttggcctccttcaaagcagtaaccttcttatcc |
194 |
Q |
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|||||||||||||||||| |||||||| || ||||| || || || ||||| || |||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
15235587 |
tcaaaacctgagcttggtaaagaaccacctattctttccagtcttaaacctctcctcgaacctcttcttcgcctccttcaaagcagtcaccttcttatcc |
15235488 |
T |
|
| Q |
195 |
ttactctgaagaacatcagtggtaacaacctccttcaaatccacatcaagagtgtaacgtgttggcataagatgctgatagttaaccaacttaacaaatg |
294 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||| || | || || || | |
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| T |
15235487 |
ttactctgaagaacatcagtagtaacaacctccttcaaatcaacatcaagagtgtaacgagtcggcatcagatgctgatagttgacgagtttcacgaaag |
15235388 |
T |
|
| Q |
295 |
ccttaacacgcgatttcttcgcagttttcttagctgaatccttcttgatcaccttagctggatacttcttgatccctgcaaccaagcaatgaccgtaagc |
394 |
Q |
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|||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||| |||||||| |
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| T |
15235387 |
ccttcacacgcgatttcttcgcggttttcttcgctgaatccttcttgataaccttagctggatacttcttgatccctgcaacaagacaatggccgtaagc |
15235288 |
T |
|
| Q |
395 |
acgttcacgggttccatcatcaaagttcttcacgat |
430 |
Q |
| |
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||| ||||| ||||| || || || ||||||||||| |
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| T |
15235287 |
acggtcacgagttccgtcgtcgaaattcttcacgat |
15235252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 94 - 212
Target Start/End: Complemental strand, 18009529 - 18009411
Alignment:
| Q |
94 |
ctcaaaacctgagcttggtgaagaaccatctgttcttcccggttttgaacctttcttcgaacctcttcttggcctccttcaaagcagtaaccttcttatc |
193 |
Q |
| |
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|||||||||| |||||||| || ||||| ||||| || || || |||||||| || || || |||||||| ||||||||||||||||| ||||||||||| |
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| T |
18009529 |
ctcaaaacctaagcttggtaaataaccacctgttttttcctgtcttgaacctctcctcaaatctcttcttcgcctccttcaaagcagtcaccttcttatc |
18009430 |
T |
|
| Q |
194 |
cttactctgaagaacatca |
212 |
Q |
| |
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||| ||||||| ||||||| |
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| T |
18009429 |
cttgctctgaaaaacatca |
18009411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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