View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15355_low_5 (Length: 460)
Name: NF15355_low_5
Description: NF15355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15355_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 37375729 - 37375992
Alignment:
| Q |
1 |
attccaaatatccgatgcacactttcacgtgttaacatgaatgggacaatatatcttgaagtgtttgcccaagaatatatgtgtcccattggttttatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37375729 |
attccaaatatccgatgcacactttcacgtgttaacatgaatgggacaatatctcttgaagtgtttgcccaagaatatatgtgtcccattggttttaagg |
37375828 |
T |
|
| Q |
101 |
caacgtgaaatcgtgaagtgttgctgctaacaaaaacttcagcatggaattcaagcacatgtcagatcagatctgtacattacaattacaaagaatggat |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
37375829 |
caacgtgaaatcgtgaagtgttgctgcta--------ttcagcatggaattcaagcacgtgttagatcagatctgtacattacaattacaaacaatggat |
37375920 |
T |
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| Q |
201 |
aagaagtataattaacttatttgtttatttatttaccaaactgcaattcaatatttttgtatacccttagga |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37375921 |
aagaagtataattaacttatttgtttatttatttaccaaactgcaattcaatatttttgtatacccttagga |
37375992 |
T |
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