View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15355_low_7 (Length: 364)

Name: NF15355_low_7
Description: NF15355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15355_low_7
NF15355_low_7
[»] chr3 (12 HSPs)
chr3 (125-296)||(6789464-6789635)
chr3 (9-122)||(6790111-6790224)
chr3 (227-330)||(6550326-6550429)
chr3 (222-324)||(6849109-6849211)
chr3 (237-324)||(6527528-6527615)
chr3 (241-331)||(6558850-6558940)
chr3 (197-324)||(6938429-6938556)
chr3 (125-197)||(17402999-17403073)
chr3 (233-323)||(6797236-6797326)
chr3 (125-195)||(1139958-1140028)
chr3 (250-314)||(6785697-6785761)
chr3 (270-323)||(9720624-9720677)
[»] chr4 (8 HSPs)
chr4 (15-122)||(23566003-23566110)
chr4 (125-199)||(7040302-7040376)
chr4 (125-197)||(23564891-23564963)
chr4 (125-200)||(18656048-18656123)
chr4 (125-199)||(52518698-52518774)
chr4 (125-197)||(52520542-52520616)
chr4 (125-198)||(3274656-3274729)
chr4 (125-159)||(23566565-23566599)
[»] scaffold0425 (1 HSPs)
scaffold0425 (233-324)||(12214-12305)
[»] chr7 (7 HSPs)
chr7 (17-122)||(21632606-21632711)
chr7 (125-198)||(28126631-28126706)
chr7 (125-197)||(20046713-20046787)
chr7 (125-197)||(28124804-28124878)
chr7 (125-195)||(44963108-44963178)
chr7 (125-197)||(4895525-4895599)
chr7 (125-195)||(44962228-44962298)
[»] chr8 (8 HSPs)
chr8 (125-197)||(30224173-30224245)
chr8 (125-197)||(5567369-5567441)
chr8 (125-195)||(31032215-31032285)
chr8 (125-195)||(3375639-3375709)
chr8 (144-197)||(5567676-5567729)
chr8 (125-161)||(3379330-3379366)
chr8 (125-182)||(6428700-6428755)
chr8 (126-159)||(25248984-25249017)
[»] chr1 (3 HSPs)
chr1 (125-197)||(48940619-48940691)
chr1 (125-197)||(16808795-16808869)
chr1 (125-190)||(17449261-17449326)
[»] chr2 (4 HSPs)
chr2 (125-198)||(29758062-29758135)
chr2 (129-195)||(8759203-8759269)
chr2 (140-201)||(31155713-31155774)
chr2 (125-182)||(20516166-20516223)
[»] chr6 (9 HSPs)
chr6 (18-122)||(24546338-24546442)
chr6 (127-197)||(9414962-9415032)
chr6 (125-198)||(5376817-5376892)
chr6 (125-197)||(5378673-5378747)
chr6 (125-195)||(15149261-15149331)
chr6 (125-195)||(19645516-19645586)
chr6 (140-197)||(9415050-9415107)
chr6 (125-198)||(1088869-1088946)
chr6 (157-197)||(30376225-30376265)
[»] scaffold0251 (1 HSPs)
scaffold0251 (37-122)||(5042-5127)
[»] chr5 (2 HSPs)
chr5 (37-112)||(25075761-25075836)
chr5 (37-112)||(25133730-25133805)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 125 - 296
Target Start/End: Complemental strand, 6789635 - 6789464
Alignment:
Q  125 ctaactatagttgattactaactatagtctaactaccttaactaactacacataacttacaactattttaacaaaaagtctcgatttacatgcctttaca 224  Q
    |||||||||  ||||||| |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  6789635 ctaactatacatgattaccaactctagtctaactaccttaactaactacacattacttccaactattttaacaaaaagtctcgatttacatgcctttaca 6789536  T
Q  225 taaagattttgtgccagtgagataattatatgttatcttagctgtgtttgaatgtaaaactagggaaaagat 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6789535 taaagattttgtgccagtgagataattatatgttatcttagctgtgtttgaatgtaaaactagggaaaagat 6789464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 6790224 - 6790111
Alignment:
Q  9 gaaatgaagaaatcagagtcgcaattcgtcaattcaggttcaagaatttccaatttctcatcttcttgcaaatcaacaaacacataattgttttcattga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6790224 gaaatgaagaaatcagagtcgcaattcgtcaattcaggttcaagaatttccaatttctcatcttcttgcgaatcaacaaacacataattgttttcattga 6790125  T
Q  109 cgattttgcagcaa 122  Q
    | || |||||||||    
T  6790124 ccatgttgcagcaa 6790111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 227 - 330
Target Start/End: Complemental strand, 6550429 - 6550326
Alignment:
Q  227 aagattttgtgccagtgagataattatatgttatcttagctgtgtttgaatgtaaaactagggaaaagatgatgtgatgcaatttatatcaccaaaagtg 326  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||  || |||||||||||||| ||| ||||||| ||    
T  6550429 aagattttgtgccagtgagataattatatgttatcttaactatgtttgaatgtaaaactagggaaagaataatgtgatgcaatttgtattaccaaaaatg 6550330  T
Q  327 agtg 330  Q
    ||||    
T  6550329 agtg 6550326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 222 - 324
Target Start/End: Complemental strand, 6849211 - 6849109
Alignment:
Q  222 acataaagattttgtgccagtgagataattatatgttatcttagctgtgtttgaatgtaaaactagggaaaagatgatgtgatgcaatttatatcaccaa 321  Q
    ||||||| | |||||||||||||||||||||||||| |||||| || |||||||||||||||||| |||||||||||  ||||||||||||||| |||||    
T  6849211 acataaaaaatttgtgccagtgagataattatatgtgatcttaactatgtttgaatgtaaaactacggaaaagatgacatgatgcaatttatattaccaa 6849112  T
Q  322 aag 324  Q
    |||    
T  6849111 aag 6849109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 237 - 324
Target Start/End: Complemental strand, 6527615 - 6527528
Alignment:
Q  237 gccagtgagataattatatgttatcttagctgtgtttgaatgtaaaactagggaaaagatgatgtgatgcaatttatatcaccaaaag 324  Q
    ||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||  ||||||||||||||| || |||||    
T  6527615 gccagtgagataattatatgtgatcttaactatgtttgaatgtaaaactagggaaaagatgacatgatgcaatttatattactaaaag 6527528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 241 - 331
Target Start/End: Complemental strand, 6558940 - 6558850
Alignment:
Q  241 gtgagataattatatgttatcttagctgtgtttgaatgtaaaactagggaaaagatgatgtgatgcaatttatatcaccaaaagtgagtga 331  Q
    ||||||||||||||||||||||||  | ||||||||| ||||||||||||| |||||||||| |||||||||||| |||||||| ||||||    
T  6558940 gtgagataattatatgttatcttaattatgtttgaatttaaaactagggaagagatgatgtgttgcaatttatattaccaaaagagagtga 6558850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 197 - 324
Target Start/End: Original strand, 6938429 - 6938556
Alignment:
Q  197 aaaaagtctcgat-ttacatgccttt-acataaagattttgtgccagtgagataattatatgttatcttagctgtgtttgaatgtaaaactagggaaaag 294  Q
    ||||||||||||| ||| | |||||| |||||||||||||||||||||||||| |||||||||||| |||    ||||||||| ||||| |||||  |||    
T  6938429 aaaaagtctcgatattaaaagcctttcacataaagattttgtgccagtgagatgattatatgttattttaataatgtttgaatctaaaaataggg--aag 6938526  T
Q  295 atgatgtgatgcaatttatatcaccaaaag 324  Q
    ||||||||||||||||||||| ||||||||    
T  6938527 atgatgtgatgcaatttatattaccaaaag 6938556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 17402999 - 17403073
Alignment:
Q  125 ctaactatagttgattacta--actatagtctaactaccttaactaactacacataacttacaactattttaaca 197  Q
    |||||||||||||||||| |  ||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17402999 ctaactatagttgattacaattactctagtctaactaccttaactaactacacataacttccaactattttaaca 17403073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 233 - 323
Target Start/End: Complemental strand, 6797326 - 6797236
Alignment:
Q  233 ttgtgccagtgagataattatatgttatcttagctgtgtttgaatgtaaaactagggaaaagatgatgtgatgcaatttatatcaccaaaa 323  Q
    ||||| ||||||||||||||| ||||||||||  | || |||||| ||||| |||||||||| |||||||||||||||||||| |||||||    
T  6797326 ttgtgtcagtgagataattatgtgttatcttaattatgattgaatttaaaaatagggaaaagttgatgtgatgcaatttatattaccaaaa 6797236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 1140028 - 1139958
Alignment:
Q  125 ctaactatagttgattactaactatagtctaactaccttaactaactacacataacttacaactattttaa 195  Q
    |||||||||||||||||||||||  |||| ||||||||||||||||| || ||||||| ||||||| ||||    
T  1140028 ctaactatagttgattactaactcaagtccaactaccttaactaactccatataacttccaactatcttaa 1139958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 6785761 - 6785697
Alignment:
Q  250 ttatatgttatcttagctgtgtttgaatgtaaaactagggaaaagatgatgtgatgcaatttata 314  Q
    |||||||||||||||  | |||||||| ||||| ||||||||| |||||||||| ||||||||||    
T  6785761 ttatatgttatcttaattatgtttgaacgtaaagctagggaaaggatgatgtgaagcaatttata 6785697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 9720677 - 9720624
Alignment:
Q  270 gtttgaatgtaaaactagggaaaagatgatgtgatgcaatttatatcaccaaaa 323  Q
    ||||| |||||| ||||||||||| |||||| ||||| |||||||| |||||||    
T  9720677 gtttggatgtaacactagggaaaatatgatgcgatgctatttatattaccaaaa 9720624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 23566003 - 23566110
Alignment:
Q  15 aagaaatcagagtcgcaattcgtcaattcaggttcaagaatttccaatttctcatcttcttgcaaatcaacaaacacataattgttttcattgacgattt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||| ||||| |    
T  23566003 aagaaatcagagtcgcaattcgtcaattcaggttcaagaatttccaatttctcatcttcttgcaaattaacaaacacagaattgtcttcatttacgatgt 23566102  T
Q  115 tgcagcaa 122  Q
    ||| ||||    
T  23566103 tgctgcaa 23566110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 125 - 199
Target Start/End: Complemental strand, 7040376 - 7040302
Alignment:
Q  125 ctaactatagttgattactaactatagtctaactaccttaactaactacacataacttacaactattttaacaaa 199  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| ||||||||    
T  7040376 ctaactatagttgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaacaaa 7040302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 23564891 - 23564963
Alignment:
Q  125 ctaactatagttgattactaactatagtctaactaccttaactaactacacataacttacaactattttaaca 197  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| ||||||    
T  23564891 ctaactatagttgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaaca 23564963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 18656123 - 18656048
Alignment:
Q  125 ctaactatagttgattactaactatagtctaactaccttaactaactacacataacttacaactattttaacaaaa 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |  ||||||||||||||    
T  18656123 ctaactatagttgattactaactctagtctaactaccttaactaacttcacataacttccggctattttaacaaaa 18656048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 125 - 199
Target Start/End: Complemental strand, 52518774 - 52518698
Alignment:
Q  125 ctaactatagttgattacta--actatagtctaactaccttaactaactacacataacttacaactattttaacaaa 199  Q
    |||||||||||||||||| |  ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  52518774 ctaactatagttgattacaattactctagtctaactaccttaactaactacacataacttccaactattttaacaaa 52518698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 52520616 - 52520542
Alignment:
Q  125 ctaactatagttgattacta--actatagtctaactaccttaactaactacacataacttacaactattttaaca 197  Q
    |||||||||||||||||| |  ||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  52520616 ctaactatagttgattacaattactctagtctaactaccttaactaactacacataacttccaactattttaaca 52520542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 3274656 - 3274729
Alignment:
Q  125 ctaactatagttgattactaactatagtctaactaccttaactaactacacataacttacaactattttaacaa 198  Q
    |||| ||||||||||||||||||||||| | |||||||||||||||| || ||||||| |||||||||||||||    
T  3274656 ctaattatagttgattactaactatagttttactaccttaactaacttcatataacttccaactattttaacaa 3274729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 159
Target Start/End: Original strand, 23566565 - 23566599
Alignment:
Q  125 ctaactatagttgattactaactatagtctaacta 159  Q
    ||||||||||||||||||||||| |||||||||||    
T  23566565 ctaactatagttgattactaactctagtctaacta 23566599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 233 - 324
Target Start/End: Complemental strand, 12305 - 12214
Alignment:
Q  233 ttgtgccagtgagataattatatgttatcttagctgtgtttgaatgtaaaactagggaaaagatgatgtgatgcaatttatatcaccaaaag 324  Q
    ||||||||||||||||||||||||| |||||| || |||||||||||||||||| |||||||||||  ||||||||||||||| ||||||||    
T  12305 ttgtgccagtgagataattatatgtgatcttaactatgtttgaatgtaaaactacggaaaagatgacatgatgcaatttatattaccaaaag 12214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 21632606 - 21632711
Alignment:
Q  17 gaaatcagagtcgcaattcgtcaattcaggttcaagaatttccaatttctcatcttcttgcaaatcaacaaacacataattgttttcattgacgattttg 116  Q
    |||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||| | ||||  |||||| ||| || ||| |||||||| |||    
T  21632606 gaaatcagagtcgcgattcttcaattcaggttcaagaacttccaatttctcatcttcttgcgattcaatgaacacacaatcgtcttctttgacgatgttg 21632705  T
Q  117 cagcaa 122  Q
    ||||||    
T  21632706 cagcaa 21632711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 28126631 - 28126706
Alignment:
Q  125 ctaactatagttgattacta--actatagtctaactaccttaactaactacacataacttacaactattttaacaa 198  Q
    |||||||||||||||||| |  ||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28126631 ctaactatagttgattacaattactctagtctaactaccttaactaactacacataacttccaactattttaacaa 28126706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 20046713 - 20046787
Alignment:
Q  125 ctaactatagttgattacta--actatagtctaactaccttaactaactacacataacttacaactattttaaca 197  Q
    |||||||||||||||||| |  ||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  20046713 ctaactatagttgattacaattactctagtctaactaccttaactaactacacataacttccaactattttaaca 20046787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 28124804 - 28124878
Alignment:
Q  125 ctaactatagttgattacta--actatagtctaactaccttaactaactacacataacttacaactattttaaca 197  Q
    |||||||||||||||||| |  ||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28124804 ctaactatagttgattacaattactctagtctaactaccttaactaactacacataacttccaactattttaaca 28124878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 44963178 - 44963108
Alignment:
Q  125 ctaactatagttgattactaactatagtctaactaccttaactaactacacataacttacaactattttaa 195  Q
    |||||||||||||||||||||||  |||||||||||||||||||||| |||||||||| ||||||| ||||    
T  44963178 ctaactatagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaa 44963108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 4895599 - 4895525
Alignment:
Q  125 ctaactatagttgattacta--actatagtctaactaccttaactaactacacataacttacaactattttaaca 197  Q
    |||||||||||||||||| |  ||| || ||||||||||||||||||||||||||||||| ||||||||||||||    
T  4895599 ctaactatagttgattacaattactctaatctaactaccttaactaactacacataacttccaactattttaaca 4895525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 44962298 - 44962228
Alignment:
Q  125 ctaactatagttgattactaactatagtctaactaccttaactaactacacataacttacaactattttaa 195  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||| |||||||||| ||||||| ||||    
T  44962298 ctaactatagttgattactcactcaagtctaactaccttaactaacttcacataacttccaactatgttaa 44962228  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 30224245 - 30224173
Alignment:
Q  125 ctaactatagttgattactaactatagtctaactaccttaactaactacacataacttacaactattttaaca 197  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| ||||||    
T  30224245 ctaactatagttgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaaca 30224173  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 5567441 - 5567369
Alignment:
Q  125 ctaactatagttgattactaactatagtctaactaccttaactaactacacataacttacaactattttaaca 197  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||| || |||||||||||    
T  5567441 ctaactatagttgattactaactctagtctaactactttaactaacttcacataacttccagctattttaaca 5567369  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 31032215 - 31032285
Alignment:
Q  125 ctaactatagttgattactaactatagtctaactaccttaactaactacacataacttacaactattttaa 195  Q
    |||||||||||||||||||||||  |||||||||||||||||||||| |||||||||| ||||||| ||||    
T  31032215 ctaactatagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaa 31032285  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 3375639 - 3375709
Alignment:
Q  125 ctaactatagttgattactaactatagtctaactaccttaactaactacacataacttacaactattttaa 195  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| |||||||||| ||||||| ||||    
T  3375639 ctaactatagttgattactaacagaagtctaactaccttaactaactccacataacttccaactatcttaa 3375709  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 5567676 - 5567729
Alignment:
Q  144 aactatagtctaactaccttaactaactacacataacttacaactattttaaca 197  Q
    |||| ||||||||||||||||||||||| |||||||||| || |||||||||||    
T  5567676 aactctagtctaactaccttaactaacttcacataacttccagctattttaaca 5567729  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 3379330 - 3379366
Alignment:
Q  125 ctaactatagttgattactaactatagtctaactacc 161  Q
    ||||||||||||||||||||||| |||||||||||||    
T  3379330 ctaactatagttgattactaactctagtctaactacc 3379366  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 6428755 - 6428700
Alignment:
Q  125 ctaactatagttgattactaactatagtctaactaccttaactaactacacataactt 182  Q
    |||| |||||||||||||||||| | ||||||||||  ||||||||| ||||||||||    
T  6428755 ctaattatagttgattactaactcttgtctaactac--taactaactccacataactt 6428700  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 25249017 - 25248984
Alignment:
Q  126 taactatagttgattactaactatagtctaacta 159  Q
    |||||||||||||||||||||| |||||||||||    
T  25249017 taactatagttgattactaactctagtctaacta 25248984  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 48940691 - 48940619
Alignment:
Q  125 ctaactatagttgattactaactatagtctaactaccttaactaactacacataacttacaactattttaaca 197  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||| ||||||||||||||    
T  48940691 ctaactatagttgattactaactcttgtctaactaccttaactaactccacataacttccaactattttaaca 48940619  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 16808795 - 16808869
Alignment:
Q  125 ctaactatagttgattacta--actatagtctaactaccttaactaactacacataacttacaactattttaaca 197  Q
    |||||||||||||||||| |  ||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16808795 ctaactatagttgattacaattactctagtctaactaccttaactaactacacataacttccaactattttaaca 16808869  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 17449326 - 17449261
Alignment:
Q  125 ctaactatagttgattactaactatagtctaactaccttaactaactacacataacttacaactat 190  Q
    |||||||||||||||||||||||  |||| ||||||||||||||||| || ||||||| |||||||    
T  17449326 ctaactatagttgattactaactcaagtccaactaccttaactaactccatataacttccaactat 17449261  T

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Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 29758135 - 29758062
Alignment:
Q  125 ctaactatagttgattactaactatagtctaactaccttaactaactacacataacttacaactattttaacaa 198  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||| ||||||| |||||||    
T  29758135 ctaactatagttgattactaagtctagtctaactaccttaactaactccacataacttccaactatcttaacaa 29758062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 8759203 - 8759269
Alignment:
Q  129 ctatagttgattactaactatagtctaactaccttaactaactacacataacttacaactattttaa 195  Q
    |||||||||||||||||||  |||||||||||||||||||||| |||||||||| ||||||| ||||    
T  8759203 ctatagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaa 8759269  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 31155713 - 31155774
Alignment:
Q  140 tactaactatagtctaactaccttaactaactacacataacttacaactattttaacaaaaa 201  Q
    |||||||| |||| |||||||||||||||||| | |||||||| |||||||| |||||||||    
T  31155713 tactaactctagtttaactaccttaactaactccgcataacttccaactattctaacaaaaa 31155774  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 20516166 - 20516223
Alignment:
Q  125 ctaactatagttgattactaactatagtctaactaccttaactaactacacataactt 182  Q
    |||||||||||| ||||||||||  ||| ||| |||||||||||||| ||||||||||    
T  20516166 ctaactatagttaattactaactccagtttaattaccttaactaactgcacataactt 20516223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 24546442 - 24546338
Alignment:
Q  18 aaatcagagtcgcaattcgtcaattcaggttcaagaatttccaatttctcatcttcttgcaaatcaacaaacacataattgttttcattgacgattttgc 117  Q
    |||| ||||| || |||| ||||||||||||||||||| ||||||||||||| ||||||| ||||||| |||||| ||| || ||| |||||||| ||||    
T  24546442 aaattagagtagcgattcttcaattcaggttcaagaatctccaatttctcattttcttgcgaatcaacgaacacacaatcgtcttctttgacgatgttgc 24546343  T
Q  118 agcaa 122  Q
    |||||    
T  24546342 agcaa 24546338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 9415032 - 9414962
Alignment:
Q  127 aactatagttgattactaactatagtctaactaccttaactaactacacataacttacaactattttaaca 197  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||| | |||||||| ||||||||||||||    
T  9415032 aactatagttgatcactaactctagtctaactaccttaactaactccgcataacttccaactattttaaca 9414962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 5376892 - 5376817
Alignment:
Q  125 ctaactatagttgattacta--actatagtctaactaccttaactaactacacataacttacaactattttaacaa 198  Q
    |||||||||||||||||| |  ||| |||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  5376892 ctaactatagttgattacaattactctagtctaactaccttaactaactacatataacttccaactattttaacaa 5376817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 5378747 - 5378673
Alignment:
Q  125 ctaactatagttgattacta--actatagtctaactaccttaactaactacacataacttacaactattttaaca 197  Q
    |||||||||||||||||| |  ||| |||||||||||||||||||||||||||||||||| |||||| |||||||    
T  5378747 ctaactatagttgattacaattactctagtctaactaccttaactaactacacataacttccaactaatttaaca 5378673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 15149261 - 15149331
Alignment:
Q  125 ctaactatagttgattactaactatagtctaactaccttaactaactacacataacttacaactattttaa 195  Q
    |||||||||||||||||||||||  |||||||||||||||||||||| | |||||||| ||||||| ||||    
T  15149261 ctaactatagttgattactaactcaagtctaactaccttaactaactccgcataacttccaactatcttaa 15149331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 19645516 - 19645586
Alignment:
Q  125 ctaactatagttgattactaactatagtctaactaccttaactaactacacataacttacaactattttaa 195  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| |||  |||||| ||||    
T  19645516 ctaactataattgattactaactctagtctaactaccttaactaactccacatatcttctaactatcttaa 19645586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 9415107 - 9415050
Alignment:
Q  140 tactaactatagtctaactaccttaactaactacacataacttacaactattttaaca 197  Q
    |||||||| |||||||||| |||||||||||| |||||||||| ||||||||||||||    
T  9415107 tactaactctagtctaacttccttaactaactccacataacttccaactattttaaca 9415050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 1088869 - 1088946
Alignment:
Q  125 ctaactatagttgattactaactatagtctaactaccttaactaacta----cacataacttacaactattttaacaa 198  Q
    ||||||||||||||| ||||||| || | ||||||| |||||||||||    |||||||||| ||| |||||||||||    
T  1088869 ctaactatagttgatcactaactctaatttaactactttaactaactaacttcacataacttccaagtattttaacaa 1088946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 30376265 - 30376225
Alignment:
Q  157 ctaccttaactaactacacataacttacaactattttaaca 197  Q
    |||| |||||||||| |||||||||| ||||||||||||||    
T  30376265 ctacgttaactaactccacataacttccaactattttaaca 30376225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 5127 - 5042
Alignment:
Q  37 tcaattcaggttcaagaatttccaatttctcatcttcttgcaaatcaacaaacacataattgttttcattgacgattttgcagcaa 122  Q
    ||||||||||||||||||  ||||||||||||||||||||| ||||||| |||| | ||| || ||| |||||||| |||||||||    
T  5127 tcaattcaggttcaagaacctccaatttctcatcttcttgcgaatcaacgaacatacaatcgtcttctttgacgatgttgcagcaa 5042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 25075761 - 25075836
Alignment:
Q  37 tcaattcaggttcaagaatttccaatttctcatcttcttgcaaatcaacaaacacataattgttttcattgacgat 112  Q
    ||||||||||||| ||||  ||| ||||||||||||||||  |||||||  ||||| ||| || ||||||||||||    
T  25075761 tcaattcaggttctagaacctccgatttctcatcttcttgtgaatcaacccacacagaatcgtcttcattgacgat 25075836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 25133730 - 25133805
Alignment:
Q  37 tcaattcaggttcaagaatttccaatttctcatcttcttgcaaatcaacaaacacataattgttttcattgacgat 112  Q
    ||||||||||||| ||||  ||| ||||||||||||||||  |||||||  ||||| ||| || ||||||||||||    
T  25133730 tcaattcaggttctagaacctccgatttctcatcttcttgtgaatcaacccacacagaatcgtcttcattgacgat 25133805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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