View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15355_low_9 (Length: 331)

Name: NF15355_low_9
Description: NF15355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15355_low_9
NF15355_low_9
[»] chr2 (1 HSPs)
chr2 (19-318)||(20694102-20694401)
[»] chr3 (13 HSPs)
chr3 (229-318)||(9494819-9494908)
chr3 (221-318)||(41985644-41985741)
chr3 (212-317)||(9695610-9695715)
chr3 (221-311)||(41980877-41980967)
chr3 (221-318)||(9448330-9448427)
chr3 (236-317)||(9655375-9655456)
chr3 (221-297)||(9485972-9486048)
chr3 (231-318)||(9352917-9353004)
chr3 (223-318)||(9617468-9617563)
chr3 (236-293)||(9626498-9626555)
chr3 (236-317)||(9646382-9646463)
chr3 (221-297)||(13864241-13864317)
chr3 (277-318)||(9336556-9336597)
[»] chr1 (3 HSPs)
chr1 (223-317)||(4428648-4428742)
chr1 (205-318)||(4439876-4439989)
chr1 (278-318)||(18991220-18991260)
[»] chr6 (6 HSPs)
chr6 (236-316)||(7041514-7041594)
chr6 (203-297)||(7012857-7012951)
chr6 (231-297)||(7029850-7029916)
chr6 (231-297)||(7025793-7025859)
chr6 (231-297)||(9170854-9170920)
chr6 (241-297)||(9159518-9159574)
[»] chr8 (1 HSPs)
chr8 (221-257)||(13170687-13170723)


Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 318
Target Start/End: Original strand, 20694102 - 20694401
Alignment:
Q  19 aaaccttatgtggtcgacaaagttggccggacaattacatttggaccggatgacttgactgttcagttagtggccgaaccttttgtcgatggtgctggtg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20694102 aaaccttatgtggtcgacaaagttggccggacaattacatttgaaccggatgacttgactgttcagttagtggccgaaccttttgtcgatggtgctggtg 20694201  T
Q  119 ggagagtaaaatttttggtggaaaatgagggtgatttgttgctagtggatatttatgagatttgtttgtcctattacctcgatgaagatgctttaagaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20694202 ggagagtaaaatttttggtggaaaatgagggtgatttgttgctagtggatatttatgagatttgtttgtcctattacctcgatgaagatgctttaagaat 20694301  T
Q  219 ttatgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttctctgct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20694302 ttatgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttttctgct 20694401  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 229 - 318
Target Start/End: Original strand, 9494819 - 9494908
Alignment:
Q  229 aggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttctctgct 318  Q
    ||||||||||| ||||||| || |||||||| |||||  ||||| ||||||||||||||||| |||||||||||||||||||| ||||||    
T  9494819 aggcttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttctgct 9494908  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 221 - 318
Target Start/End: Complemental strand, 41985741 - 41985644
Alignment:
Q  221 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttctctgct 318  Q
    |||||||||| |||||||| ||||||||||||||||| |  ||| | ||||| |||||||| |||||||| |||||||||||||||||||| ||||||    
T  41985741 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgct 41985644  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 317
Target Start/End: Original strand, 9695610 - 9695715
Alignment:
Q  212 taagaatttatgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgtt 311  Q
    |||| ||| |||| |||||||||||||| ||||||||||| ||||| |  ||||| | ||| |||||||||||||||||||||||| | |  ||||||||    
T  9695610 taagtattgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttcgtt 9695709  T
Q  312 ctctgc 317  Q
    ||||||    
T  9695710 ctctgc 9695715  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 311
Target Start/End: Complemental strand, 41980967 - 41980877
Alignment:
Q  221 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgtt 311  Q
    ||||||| ||||||| | | || |||||||||||||| |  ||||| ||||| |||||||| |||||||| ||||||||||||||||||||    
T  41980967 atgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgtt 41980877  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 221 - 318
Target Start/End: Complemental strand, 9448427 - 9448330
Alignment:
Q  221 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttctctgct 318  Q
    ||||||| | |||| |||| |||||||||||||||||||  || |||| ||| |||||||| |||||||| ||||||||||  |||||||| ||||||    
T  9448427 atgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgttttctgct 9448330  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 317
Target Start/End: Original strand, 9655375 - 9655456
Alignment:
Q  236 atgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttctctgc 317  Q
    |||| |||||||||||||||||||  ||||  | ||| |||||||||||||||||||||||  | ||||||||||| |||||    
T  9655375 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttgggcgaaggatgttcgttttctgc 9655456  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 9485972 - 9486048
Alignment:
Q  221 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttgggg 297  Q
    ||||||| ||||||||||| ||||||||||| ||||||    ||| || ||||||||||| ||||||||||||||||    
T  9485972 atgtgtttaggcttgatgagaaggagaagaagtgggtggaggtgagaaatttgggggatatggttttgtttttgggg 9486048  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 318
Target Start/End: Complemental strand, 9353004 - 9352917
Alignment:
Q  231 gcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttctctgct 318  Q
    ||||||||| | ||||||||| |||||||  |||| ||  || |||| ||||||||||||| |||||| |||||||||||| ||||||    
T  9353004 gcttgatgagatggagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttctgct 9352917  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 318
Target Start/End: Original strand, 9617468 - 9617563
Alignment:
Q  223 gtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttctctgct 318  Q
    ||||||||| || |||| || ||||||||||||||||  |||| || ||| |||||||||||||||||  | | |||||||||||| || ||||||    
T  9617468 gtgttcaggtttcatgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctgct 9617563  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 9626498 - 9626555
Alignment:
Q  236 atgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgttttt 293  Q
    |||| ||||||||||||||||||| |||||  | ||| ||||||||||||||||||||    
T  9626498 atgagaaggagaagaaatgggtgaatttgatgaatttaggggatagggttttgttttt 9626555  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 317
Target Start/End: Original strand, 9646382 - 9646463
Alignment:
Q  236 atgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttctctgc 317  Q
    |||| |||||||||||||||||||  ||||  | ||| |||||||||||||||||||| ||  | ||||||||||| |||||    
T  9646382 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgttttttggcgaaggatgttcgttttctgc 9646463  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 13864317 - 13864241
Alignment:
Q  221 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttgggg 297  Q
    ||||||| ||||||||||| | |||||| || ||||||    ||| || ||||||||||||||||||||||||||||    
T  13864317 atgtgtttaggcttgatgagagggagaaaaagtgggtggaggtgagaaatttgggggatagggttttgtttttgggg 13864241  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 9336597 - 9336556
Alignment:
Q  277 gatagggttttgtttttggggaatggatgttcgttctctgct 318  Q
    |||| ||||||||| |||||||||||||||||||| ||||||    
T  9336597 gataaggttttgttcttggggaatggatgttcgttttctgct 9336556  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 4428742 - 4428648
Alignment:
Q  223 gtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttctctgc 317  Q
    ||||| ||||||||||| |||| |   ||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  4428742 gtgtttaggcttgatgagaaggcgcgtaaatgggtgaaattgacgagtttgggggatagggttttgtttttggggaatggatgtttgttttctgc 4428648  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 205 - 318
Target Start/End: Complemental strand, 4439989 - 4439876
Alignment:
Q  205 gatgctttaagaatttatgtgttcaggcttgatgaaaaggagaagaaatggg-tgagtttgacaagtttgggggatagggttttgtttttggggaatgga 303  Q
    |||| |||||| ||| ||||||| ||| ||||||| ||||||   ||||||| ||| |||||  |||||||| |||||||||||||||||||||||||||    
T  4439989 gatgttttaaggattaatgtgtttaggtttgatgagaaggagtgtaaatgggctga-tttgatgagtttgggagatagggttttgtttttggggaatgga 4439891  T
Q  304 tgttcgttctctgct 318  Q
    |||||||| ||||||    
T  4439890 tgttcgttttctgct 4439876  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 18991260 - 18991220
Alignment:
Q  278 atagggttttgtttttggggaatggatgttcgttctctgct 318  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  18991260 atagggttttgttcttggggaatggatgttcgttttctgct 18991220  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 7041594 - 7041514
Alignment:
Q  236 atgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttctctg 316  Q
    |||| ||||||||||| |||||||  ||||| ||||| ||||||||||||||||| |||||  | | ||||||||||||||    
T  7041594 atgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctg 7041514  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 297
Target Start/End: Complemental strand, 7012951 - 7012857
Alignment:
Q  203 aagatgctttaagaatttatgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttgggg 297  Q
    ||||| || |||||||| || |||| | |||| |||| ||||||||||| |||||||  ||||||||||| || |||||| ||||||| ||||||    
T  7012951 aagatcctgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 7012857  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 297
Target Start/End: Complemental strand, 7029916 - 7029850
Alignment:
Q  231 gcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttgggg 297  Q
    |||| |||| ||||||||||| |||||||  ||||| ||||| ||||||||||||||||| ||||||    
T  7029916 gcttaatgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttgggg 7029850  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 297
Target Start/End: Complemental strand, 7025859 - 7025793
Alignment:
Q  231 gcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttgggg 297  Q
    |||| |||| ||||||||||| |||||||  ||||| ||||| || |||||||||||||| ||||||    
T  7025859 gcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttgggg 7025793  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 297
Target Start/End: Complemental strand, 9170920 - 9170854
Alignment:
Q  231 gcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttgggg 297  Q
    |||| |||| ||||||||||| |||||||  || || ||||| ||||||||||||||||| ||||||    
T  9170920 gcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9170854  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 9159518 - 9159574
Alignment:
Q  241 aaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttgggg 297  Q
    ||||||||||| |||||||  || || ||||| ||||||||||||||||| ||||||    
T  9159518 aaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9159574  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 13170687 - 13170723
Alignment:
Q  221 atgtgttcaggcttgatgaaaaggagaagaaatgggt 257  Q
    |||||||||| ||||||||||||||||||||||||||    
T  13170687 atgtgttcagacttgatgaaaaggagaagaaatgggt 13170723  T

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