View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15356_high_1_N (Length: 400)
Name: NF15356_high_1_N
Description: NF15356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15356_high_1_N |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 99 - 382
Target Start/End: Original strand, 4985817 - 4986100
Alignment:
| Q |
99 |
ctgagaagatattttattcttgattgtgtatcaaaatttgtttaaattgcggcacaaactcttgtaattttaatgtaaatataggacactacttgccgac |
198 |
Q |
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| T |
4985817 |
ctgagaagatattttattcttgattgtatatcaaaatttgtttaaattgcggcacaaactcttgtaattttaatgtaaatataggacactacttgccgaa |
4985916 |
T |
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| Q |
199 |
agttgaaaattttgagctccaaagtctcaatcagatttcaaacctaactgttgacaatgaactttgtaggtgagattccttgagattacggcaactgtta |
298 |
Q |
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||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
4985917 |
agtagaaaattttgagctccaaagtctcaatcaaatttcaaacctaactgttgacaatgaactttgtcggtgagattccttgagattatggcaactgtta |
4986016 |
T |
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| Q |
299 |
tgtcataaaaaaggtttnnnnnnntagcagtctcatttttaaggttagtgtgtcttaccatatttttgcatgatgatgatgtcc |
382 |
Q |
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||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
4986017 |
tgtcataaaaaaggtttaaaaaaataacagtctcatttttaaggttagtgtgtcttaccatatttttgcatgatgttaatgtcc |
4986100 |
T |
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