View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15356_high_5 (Length: 361)

Name: NF15356_high_5
Description: NF15356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15356_high_5
NF15356_high_5
[»] chr7 (10 HSPs)
chr7 (34-352)||(4643243-4643561)
chr7 (33-139)||(4661583-4661689)
chr7 (1-44)||(4662886-4662929)
chr7 (104-147)||(4666697-4666740)
chr7 (225-325)||(4666507-4666607)
chr7 (254-325)||(4630481-4630552)
chr7 (1-40)||(4672575-4672614)
chr7 (1-44)||(4712232-4712275)
chr7 (34-71)||(4630780-4630817)
chr7 (37-73)||(4647384-4647420)
[»] chr4 (2 HSPs)
chr4 (100-147)||(18926028-18926075)
chr4 (1-38)||(18925899-18925936)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 34 - 352
Target Start/End: Complemental strand, 4643561 - 4643243
Alignment:
Q  34 ctctcaaaatgaaagagctaatctttcaatcaagcttcaatcattgacagaacacactggtttcatattgaatggtatcgaaattttaaaaataagtgac 133  Q
    |||||||  ||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| ||||| ||||||||||||||||||    
T  4643561 ctctcaacttgaaagagctaatctttcaatcaagcttcaaccattgacagaatacaatggtttcatattgaatggaatcgagattttaaaaataagtgac 4643462  T
Q  134 aaaaataacaatcttgcgattgcaatttcaacccaatcggcaaaaagaattaagaccaccccactcgtggctattgttgttgtgactaccatttctggcc 233  Q
    |||||||||||||| ||||||||| |||||||||||||| |||||| || ||||| ||||||||| ||||||||||||||||||||| |  |||||||||    
T  4643461 aaaaataacaatctcgcgattgcagtttcaacccaatcgtcaaaaataactaagatcaccccacttgtggctattgttgttgtgacttcagtttctggcc 4643362  T
Q  234 tcgtactagcaatttcggtaggtatcactgttttttggctaatgagaaggtgtcataatgccatggatgataatttgttgaagacaaagaacgagggatc 333  Q
    | || |||||||||||  | |||||||||||||||||| |||| |||||||||||||||| |||||| |||||||| |||||||||||||||| ||  ||    
T  4643361 ttgtgctagcaatttccatgggtatcactgttttttggataataagaaggtgtcataatgtcatggaagataatttattgaagacaaagaacggggagtc 4643262  T
Q  334 tttgccgccccatctgtgc 352  Q
    |||||||||||||||||||    
T  4643261 tttgccgccccatctgtgc 4643243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 4661689 - 4661583
Alignment:
Q  33 actctcaaaatgaaagagctaatctttcaatcaagcttcaatcattgacagaacacactggtttcatattgaatggtatcgaaattttaaaaataagtga 132  Q
    ||||||||| |||||||| | |||||||||||||||||||| ||||  || || ||| |||| ||||||||||||| || || |||||||| ||||||||    
T  4661689 actctcaaattgaaagagttgatctttcaatcaagcttcaaccattatcaaaatacagtggtgtcatattgaatggaattgagattttaaatataagtga 4661590  T
Q  133 caaaaat 139  Q
    | |||||    
T  4661589 cgaaaat 4661583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 4662929 - 4662886
Alignment:
Q  1 tcctgttcataaggattatgctgtggctatgtactctcaaaatg 44  Q
    |||||||||||||||||||| |||| ||||||||||||||||||    
T  4662929 tcctgttcataaggattatggtgtgactatgtactctcaaaatg 4662886  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 4666740 - 4666697
Alignment:
Q  104 aatggtatcgaaattttaaaaataagtgacaaaaataacaatct 147  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||    
T  4666740 aatggaatcgagattttaaaaataagtgacaaaaataacaatct 4666697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 325
Target Start/End: Complemental strand, 4666607 - 4666507
Alignment:
Q  225 tttctggcctcgtactagcaatttcggtaggtatcactgttttttggctaatgagaaggtgtcataatgccatggatgataatttgttgaagacaaagaa 324  Q
    |||| |||||||| |||||||||   || |||||||  ||||||||||||| |||||||| ||| |||| |||||  ||||| |||| ||| ||||||||    
T  4666607 tttcaggcctcgtgctagcaattattgtgggtatcatagttttttggctaaggagaaggtttcacaatgtcatggcagataacttgtcgaaaacaaagaa 4666508  T
Q  325 c 325  Q
    |    
T  4666507 c 4666507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 4630552 - 4630481
Alignment:
Q  254 ggtatcactgttttttggctaatgagaaggtgtcataatgccatggatgataatttgttgaagacaaagaac 325  Q
    ||||||||| |||||||||||| ||||||||  || ||||||||||  ||||||| ||  ||||||||||||    
T  4630552 ggtatcactattttttggctaaggagaaggttacacaatgccatggcagataattcgtgtaagacaaagaac 4630481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 4672614 - 4672575
Alignment:
Q  1 tcctgttcataaggattatgctgtggctatgtactctcaa 40  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  4672614 tcctgttcataaggattatgctgtcactatgtactctcaa 4672575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 4712232 - 4712275
Alignment:
Q  1 tcctgttcataaggattatgctgtggctatgtactctcaaaatg 44  Q
    |||||||||||||||||||||||||   ||||||||||||||||    
T  4712232 tcctgttcataaggattatgctgtgaaaatgtactctcaaaatg 4712275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 4630817 - 4630780
Alignment:
Q  34 ctctcaaaatgaaagagctaatctttcaatcaagcttc 71  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  4630817 ctctcaaattgaaagagttaatctttcaatcaagcttc 4630780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 4647420 - 4647384
Alignment:
Q  37 tcaaaatgaaagagctaatctttcaatcaagcttcaa 73  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  4647420 tcaaattgaaagagttaatctttcaatcaagcttcaa 4647384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 18926028 - 18926075
Alignment:
Q  100 attgaatggtatcgaaattttaaaaataagtgacaaaaataacaatct 147  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  18926028 attgaatgggatcgagattttgaaaataagtgacaaaaataacaatct 18926075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18925899 - 18925936
Alignment:
Q  1 tcctgttcataaggattatgctgtggctatgtactctc 38  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  18925899 tcctgttcataaggattatgttgtgactatgtactctc 18925936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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