View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15356_low_1 (Length: 259)
Name: NF15356_low_1
Description: NF15356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15356_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 37577199 - 37577442
Alignment:
| Q |
1 |
ttttaaaatattaactattaccaaacaaatttaaatttatatagagttgaaaatatcatgacatacttgtcattaataatctgtgttaagaaatctaatt |
100 |
Q |
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| T |
37577199 |
ttttaaaatattaactattaccaaacaaatttaaatttatatagagttgaaaatatcatgacatacttgtcattaataatctgtgttaagaaatctaatt |
37577298 |
T |
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| Q |
101 |
taacttttccctcctactttcagtatctaaacaaaatttgggtcttaacatctgtgttaactatacaatctcagagatattcacactttaactggtcaat |
200 |
Q |
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| T |
37577299 |
taacttttccctcctactttcagtatctaaacaaaatttgggtcttaacatctgtgttaactatacaatctcagagatattcacactttaactggtcaat |
37577398 |
T |
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| Q |
201 |
caaaatgtttttgatgttccatctcaacgaaagagcatgaatgt |
244 |
Q |
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| T |
37577399 |
caaaatgtttttgatgttccatctcaacgaaagagcatgaatgt |
37577442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 37590123 - 37590217
Alignment:
| Q |
133 |
aaaatttgggtcttaacatctgtgttaactatacaatctcagagatattcacactttaactggtcaatcaaaatgtttttgatgttccatctcaac |
228 |
Q |
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| T |
37590123 |
aaaagttgggtcttaacatctatggtaactgtaca-tcccatagatatttacactttaactggtcaatcaaaatgaatttactgttccatctcaac |
37590217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 244
Target Start/End: Original strand, 37583391 - 37583434
Alignment:
| Q |
201 |
caaaatgtttttgatgttccatctcaacgaaagagcatgaatgt |
244 |
Q |
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| T |
37583391 |
caaaatgtatttgatgttccatcttaacgaaagaacatgaatgt |
37583434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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