View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15356_low_2 (Length: 243)
Name: NF15356_low_2
Description: NF15356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15356_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 4970946 - 4971167
Alignment:
| Q |
2 |
ggactttttctataagctgcaaataagccgtttatccaaagaggtc-ttaaggcatttatagcacaaattaactgnnnnnnnnttctttatataaaatac |
100 |
Q |
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| T |
4970946 |
ggactttttctataagctgcaaataagccgtttatccaaagaggtccttaaggcatttatagcacaaattaactgaaaaaaa-ttctttatataaaatac |
4971044 |
T |
|
| Q |
101 |
tgcatcataagtctgcagacagaacacgtccctgcataacctcactttcgattcttctaccacataannnnnnnccatattaaagcattttaaagcgaaa |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
4971045 |
tgcatcataagtctgcagacagaacacatccctgcataacctcactttcgattcttcttccacataatttttttccatattaaagcattttaaagcgaaa |
4971144 |
T |
|
| Q |
201 |
catttcatttatactgtgtttac |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
4971145 |
catttcatttatactgtgtttac |
4971167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 13907528 - 13907493
Alignment:
| Q |
6 |
tttttctataagctgcaaataagccgtttatccaaa |
41 |
Q |
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| T |
13907528 |
tttttctataagctgcaaataagctgtttatccaaa |
13907493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 11861728 - 11861696
Alignment:
| Q |
9 |
ttctataagctgcaaataagccgtttatccaaa |
41 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
11861728 |
ttctataagctgcaaataagcagtttatccaaa |
11861696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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