View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15357_high_13 (Length: 387)

Name: NF15357_high_13
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15357_high_13
NF15357_high_13
[»] chr4 (6 HSPs)
chr4 (204-382)||(40701024-40701202)
chr4 (70-160)||(40701215-40701305)
chr4 (100-180)||(29567611-29567689)
chr4 (241-278)||(46805046-46805083)
chr4 (194-276)||(40317747-40317829)
chr4 (194-276)||(40327821-40327903)
[»] chr1 (4 HSPs)
chr1 (3-180)||(10510868-10511045)
chr1 (3-178)||(8436267-8436443)
chr1 (3-81)||(13430787-13430865)
chr1 (3-69)||(25001204-25001270)
[»] scaffold0010 (1 HSPs)
scaffold0010 (3-147)||(152897-153041)
[»] chr3 (5 HSPs)
chr3 (3-180)||(43377186-43377363)
chr3 (11-169)||(48757126-48757283)
chr3 (183-257)||(43838795-43838869)
chr3 (245-278)||(4136547-4136580)
chr3 (184-276)||(7672488-7672579)
[»] chr7 (3 HSPs)
chr7 (21-165)||(10227513-10227658)
chr7 (3-169)||(43974830-43974998)
chr7 (72-161)||(33493464-33493554)
[»] chr8 (1 HSPs)
chr8 (3-117)||(42654085-42654199)
[»] chr6 (1 HSPs)
chr6 (208-283)||(21020885-21020960)
[»] chr2 (3 HSPs)
chr2 (194-267)||(28779804-28779877)
chr2 (194-267)||(6923828-6923901)
chr2 (188-237)||(8001974-8002023)


Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 204 - 382
Target Start/End: Complemental strand, 40701202 - 40701024
Alignment:
Q  204 tctgagactatcttgactaataaagtgtgcaatcgatgacaattttaaaattttaatatattgaaaaactattataattattccttagctacacattcag 303  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||     
T  40701202 tctgagactatcttgactaataaagtgtgcaatcgataacaattttaaaattttgatatattgaaaaactattataattattccttaactacacattcat 40701103  T
Q  304 agggaaaagatgaccatctccccaaatgtaaataatacaataatatttctcccgtcccataataatgattcatctcact 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40701102 agggaaaagatgaccatctccccaaatgtaaataatacaataatatttctcccgtcccataataatgattcatttcact 40701024  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 40701305 - 40701215
Alignment:
Q  70 cttaaatgcattttagtgaaaataaggaaagttcttgaatcctatgtggcaagtattggcccataaaaattaacttgagaacatcaacatt 160  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||| || |||||||||| |||||||||||||||||||| ||||||    
T  40701305 cttaaatgcattttagtgaaaatgaggaaagtttttgaatcctatgtggtaattattggcccacaaaaattaacttgagaacattaacatt 40701215  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 100 - 180
Target Start/End: Original strand, 29567611 - 29567689
Alignment:
Q  100 gttcttgaatcctatgtggcaagtattggcccataaaaattaacttgagaacatcaacattgttctagcagtggagatgct 180  Q
    ||||||||||| ||||||| ||  |||| |||| ||||||||||||||  |||||||||||||||||||| ||||||||||    
T  29567611 gttcttgaatcttatgtggtaatcattgacccacaaaaattaacttga--acatcaacattgttctagcattggagatgct 29567689  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 46805046 - 46805083
Alignment:
Q  241 gacaattttaaaattttaatatattgaaaaactattat 278  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  46805046 gacaattttaaaattttaatatattgaaagactattat 46805083  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 276
Target Start/End: Original strand, 40317747 - 40317829
Alignment:
Q  194 tattttaacgtctgagactatcttgactaataaagtgtgcaatcgatgacaattttaaaattttaatatattgaaaaactatt 276  Q
    |||||||||||| |||||||| |||| ||| ||||||| ||||| | ||| ||||||||| ||| ||| |||||  |||||||    
T  40317747 tattttaacgtcagagactattttgattaacaaagtgtacaatcaaggactattttaaaaattttatacattgatgaactatt 40317829  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 276
Target Start/End: Original strand, 40327821 - 40327903
Alignment:
Q  194 tattttaacgtctgagactatcttgactaataaagtgtgcaatcgatgacaattttaaaattttaatatattgaaaaactatt 276  Q
    |||||||||||| |||||||| |||| ||| ||||||| ||||| | ||| ||||||||| ||| ||| |||||  |||||||    
T  40327821 tattttaacgtcagagactattttgattaacaaagtgtacaatcaaggactattttaaaaattttatacattgatgaactatt 40327903  T

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Target: chr1 (Bit Score: 138; Significance: 5e-72; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 3 - 180
Target Start/End: Complemental strand, 10511045 - 10510868
Alignment:
Q  3 agaggaaaggaaaagaaaatataatatgtgaagttcatggtggactaaatataaaacaaattaagaacttaaatgcattttagtgaaaataaggaaagtt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  10511045 agaggaaaggaaaagaaaatataatatgtgaagttcatggtggaccccatataaaacaaattaagaacttaaatgcattgtagtgaaaatgaggaaagtt 10510946  T
Q  103 cttgaatcctatgtggcaagtattggcccataaaaattaacttgagaacatcaacattgttctagcagtggagatgct 180  Q
    ||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||    
T  10510945 cttgaattctatgtggcaattattggcccacaaaaattaacttgagaacatcaacattgttctagcggttgagatgct 10510868  T

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Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 3 - 178
Target Start/End: Complemental strand, 8436443 - 8436267
Alignment:
Q  3 agaggaaaggaaaagaaaatataatatgtgaagttcatggtggactaaatataaaacaaattaagaacttaaatgcattttagtgaaaataaggaaa-gt 101  Q
    |||||||| |||||||||||||| ||||||||||| ||||| |||   ||||||||||||||||||||||||||||||| |||||||||| ||| |  |     
T  8436443 agaggaaatgaaaagaaaatatactatgtgaagtttatggtagaccccatataaaacaaattaagaacttaaatgcattgtagtgaaaatgagggagtga 8436344  T
Q  102 tcttgaatcctatgtggcaagtattggcccataaaaattaacttgagaacatcaacattgttctagcagtggagatg 178  Q
    |||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||| |||||||||    
T  8436343 tcttgaatcctatgtggcaattattggcctacaaaaattaacttgagaacatcaacattgttctagcggtggagatg 8436267  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 13430787 - 13430865
Alignment:
Q  3 agaggaaaggaaaagaaaatataatatgtgaagttcatggtggactaaatataaaacaaattaagaacttaaatgcatt 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  13430787 agaggaaaggaaaagaaaatataatatgtgaagttcatggtggaccccatataaaacaaattaagaacttaaatgcatt 13430865  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 25001204 - 25001270
Alignment:
Q  3 agaggaaaggaaaagaaaatataatatgtgaagttcatggtggactaaatataaaacaaattaagaa 69  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||   |||||||||||| ||||||    
T  25001204 agaggaaaggaaatgaatatataatatgtgaagttcatggtggacctcatataaaacaaactaagaa 25001270  T

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Target: scaffold0010 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 3 - 147
Target Start/End: Complemental strand, 153041 - 152897
Alignment:
Q  3 agaggaaaggaaaagaaaatataatatgtgaagttcatggtggactaaatataaaacaaattaagaacttaaatgcattttagtgaaaataaggaaagtt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  153041 agaggaaaggaaaagaaaatataatatgtgaagttcatggtggaccccatataaaacaaattaagaacttaaatgcattgtagtgaaaatgaggaaagtt 152942  T
Q  103 cttgaatcctatgtggcaagtattggcccataaaaattaacttga 147  Q
    |||||||||||| |||||| | |||||||| ||||||||||||||    
T  152941 cttgaatcctatatggcaattgttggcccacaaaaattaacttga 152897  T

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Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 43377186 - 43377363
Alignment:
Q  3 agaggaaaggaaaagaaaatataatatgtgaagttcatggtggactaaatataaaacaaattaagaacttaaatgcattttagtgaaaataaggaaagtt 102  Q
    |||| ||||||||| |||||||||||||  |||||||||||||||   |||||||| |||||||||||||| ||||||| |||  ||||| |||||||||    
T  43377186 agagaaaaggaaaataaaatataatatggaaagttcatggtggaccccatataaaataaattaagaacttagatgcattgtagcaaaaatgaggaaagtt 43377285  T
Q  103 cttgaatcctatgtggcaagtattggcccataaaaattaacttgagaacatcaacattgttctagcagtggagatgct 180  Q
    ||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| || |||||||||    
T  43377286 cttaaatcctatgtggcaattattggcccacaaaaattaacttgagaacatcaacattgttctaggagcggagatgct 43377363  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 48757126 - 48757283
Alignment:
Q  11 ggaaaagaaaatataatatgtgaagttcatggtggactaaatataaaacaaattaagaacttaaatgcattttagtgaaaataaggaaa-gttcttgaat 109  Q
    |||||||||||||   |||||||||||||||||||||   ||||||||||||||||||||||||||| ||| |||||||||| | |||  ||||||||||    
T  48757126 ggaaaagaaaatac--tatgtgaagttcatggtggaccgcatataaaacaaattaagaacttaaatgaattgtagtgaaaatgaagaagtgttcttgaat 48757223  T
Q  110 cctatgtggcaagtattggcccataaaaattaacttgagaacatcaacattgttctagca 169  Q
    ||||||| |||| |||||||||| |||||||||| |||||||||||||||| ||||||||    
T  48757224 cctatgtagcaattattggcccacaaaaattaacatgagaacatcaacattattctagca 48757283  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 43838795 - 43838869
Alignment:
Q  183 cattgatgaactattttaacgtctgagactatcttgactaataaagtgtgcaatcgatgacaattttaaaatttt 257  Q
    |||||||||| ||||||||||||  ||||||| |||||||| ||| ||  ||||| ||||| |||||||||||||    
T  43838795 cattgatgaattattttaacgtcaaagactattttgactaacaaaatgcacaatcaatgactattttaaaatttt 43838869  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 4136580 - 4136547
Alignment:
Q  245 attttaaaattttaatatattgaaaaactattat 278  Q
    ||||||||||||||||||||||||| ||||||||    
T  4136580 attttaaaattttaatatattgaaagactattat 4136547  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 276
Target Start/End: Original strand, 7672488 - 7672579
Alignment:
Q  184 attgatgaactattttaacgtctgagactatcttgactaataaagtgtgcaatcgatgacaattttaaaattttaatatattgaaaaactatt 276  Q
    ||||||||| |||||||| ||  |||||||| |||||||| ||| ||| |||||   |||||||| |||||||||||| |||||  |||||||    
T  7672488 attgatgaagtattttaatgttagagactattttgactaacaaaatgtacaatcagagacaattt-aaaattttaatacattgatgaactatt 7672579  T

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Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 10227513 - 10227658
Alignment:
Q  21 atataatatgtgaagttcatggtggactaaatataaaacaaattaagaacttaaatgcattttagtgaaaataaggaaagttctt-gaatcctatgtggc 119  Q
    |||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||||  ||||||||| | |||||||||| || | |||||||||    
T  10227513 atataatatgtgaagttcatggtggaccccatataaaacaaactaagaacttaaatgcattgcagtgaaaatgatgaaagttcttagagttctatgtggc 10227612  T
Q  120 aagtattggcccataaaaattaacttgagaacatcaacattgttct 165  Q
    || |||||||||| ||||||||  ||||||||||||| ||||||||    
T  10227613 aattattggcccacaaaaattacattgagaacatcaatattgttct 10227658  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 3 - 169
Target Start/End: Complemental strand, 43974998 - 43974830
Alignment:
Q  3 agaggaaaggaaaagaaaatataatatgtgaagttcatggtggactaaatataaaacaaattaagaacttaaatgc-attttagtgaaaat-aaggaaag 100  Q
    ||||||||| |||||||||||||   |||||||||||||||||||    ||||||||||||||||||||||||||| ||| |||||||||| | |||  |    
T  43974998 agaggaaagaaaaagaaaatata---tgtgaagttcatggtggacgccgtataaaacaaattaagaacttaaatgcaattgtagtgaaaatgagggagtg 43974902  T
Q  101 ttcttgaatccta--tgtggcaagtattggcccataaaaattaacttgagaacatc-aacattgttctagca 169  Q
    ||||| |||||||  ||||| || || ||||||| ||||||||||||||||| ||| |||||||||||||||    
T  43974901 ttcttaaatcctatgtgtggtaattagtggcccacaaaaattaacttgagaatatcaaacattgttctagca 43974830  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 161
Target Start/End: Complemental strand, 33493554 - 33493464
Alignment:
Q  72 taaatgcattttagtgaaaataa-ggaaagttcttgaatcctatgtggcaagtattggcccataaaaattaacttgagaacatcaacattg 161  Q
    |||||| ||| |||||||||| | |||  |||||| ||||||| ||||||| || ||||||| ||||||||||||||||||||||||||||    
T  33493554 taaatgtattgtagtgaaaatgatggattgttcttcaatcctaagtggcaattaatggcccacaaaaattaacttgagaacatcaacattg 33493464  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 42654085 - 42654199
Alignment:
Q  3 agaggaaaggaaaagaaaatataatatgtgaagttcatggtggactaaatataaaacaaattaagaacttaaatgcattttagtgaaaataaggaaagtt 102  Q
    ||||| ||||||| ||| ||||||||||||||||| ||||||||    ||||||| |||| ||  |||||||||| ||| |||| ||||| |  ||||||    
T  42654085 agagggaaggaaatgaatatataatatgtgaagtttatggtggatcccatataaatcaaactacaaacttaaatgtattgtagtaaaaatgataaaagtt 42654184  T
Q  103 cttgaatcctatgtg 117  Q
    ||||||| |||||||    
T  42654185 cttgaattctatgtg 42654199  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 21020960 - 21020885
Alignment:
Q  208 agactatcttgactaataaagtgtgcaatcgatgacaattttaaaattttaatatattgaaaaactattataatta 283  Q
    ||||||| |||||||| ||| |||  |||||||||| ||||||||||||| ||| || |||| |||||||||||||    
T  21020960 agactattttgactaaaaaaatgtataatcgatgactattttaaaattttgatacatcgaaagactattataatta 21020885  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 28779804 - 28779877
Alignment:
Q  194 tattttaacgtctgagactatcttgactaataaagtgtgcaatcgatgacaattttaaaattttaatatattga 267  Q
    ||||||| |||||||  |||| |||||||||| ||||| ||||| || || ||||||||||||| |||||||||    
T  28779804 tattttagcgtctgaatctattttgactaatatagtgtacaatcaataactattttaaaattttgatatattga 28779877  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 6923828 - 6923901
Alignment:
Q  194 tattttaacgtctgagactatcttgactaataaagtgtgcaatcgatgacaattttaaaattttaatatattga 267  Q
    ||||||| |||||||  || | |||||||||| ||||| ||||| || || ||||||||||||| |||||||||    
T  6923828 tattttagcgtctgaatctcttttgactaatatagtgtacaatcaataactattttaaaattttgatatattga 6923901  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 8002023 - 8001974
Alignment:
Q  188 atgaactattttaacgtctgagactatcttgactaataaagtgtgcaatc 237  Q
    ||||| |||||||||||| |||||||| |||||||||| ||||| |||||    
T  8002023 atgaaatattttaacgtcagagactattttgactaatagagtgttcaatc 8001974  T

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