View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15357_high_14 (Length: 381)

Name: NF15357_high_14
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15357_high_14
NF15357_high_14
[»] chr6 (13 HSPs)
chr6 (207-360)||(4389386-4389539)
chr6 (1-129)||(4389179-4389307)
chr6 (207-364)||(4384274-4384431)
chr6 (207-364)||(4376701-4376858)
chr6 (1-129)||(4376492-4376620)
chr6 (13-129)||(4384078-4384194)
chr6 (230-360)||(4415015-4415145)
chr6 (219-364)||(5725996-5726138)
chr6 (1-114)||(4369335-4369448)
chr6 (1-114)||(4364935-4365048)
chr6 (2-127)||(5726221-5726346)
chr6 (10-80)||(4359567-4359637)
chr6 (255-325)||(4365193-4365263)
[»] chr8 (1 HSPs)
chr8 (1-129)||(3595557-3595684)


Alignment Details
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 207 - 360
Target Start/End: Original strand, 4389386 - 4389539
Alignment:
Q  207 caattataaaaactaatgttgataatcgatcctgctgaaaatatatacctttctatgccccctttagaaagaccccttcgtatttcatctttagctttct 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4389386 caattataaaaactaatgttgataatcgatcctgctgaaaatatatacctttctatgccccctttagaaagaccccttcgtatttcatctttagctttct 4389485  T
Q  307 ccattgcttcataaatgaaaccggtggctggttcatcaattgaattgaccaaac 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4389486 ccattgcttcataaatgaaaccggtggctggttcatcaattgaattgaccaaac 4389539  T

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Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 4389179 - 4389307
Alignment:
Q  1 tttaacttcaatatcatctccaaatgcatcgctatagtgaaactgagggttaagaaaatagcctgctgcatgcaaagggccatgtagtcgttcgtcccat 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  4389179 tttaacttcaatatcatctccaaatacatcgctatagtgaaactgagggttaagaaaatagcctgctgcatgcaaagggccgtggagtcgttcgtcccat 4389278  T
Q  101 ctttcgtcaatgatctcccatagaggcat 129  Q
    |||||||||||||||||||||||||||||    
T  4389279 ctttcgtcaatgatctcccatagaggcat 4389307  T

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Target: chr6; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 207 - 364
Target Start/End: Original strand, 4384274 - 4384431
Alignment:
Q  207 caattataaaaactaatgttgataatcgatcctgctgaaaatatatacctttctatgccccctttagaaagaccccttcgtatttcatctttagctttct 306  Q
    |||||||||||||||||||||||||| ||||||| |||||||||  |||| ||| |||| |||||  ||||||||||||||||||| |||||||||||||    
T  4384274 caattataaaaactaatgttgataatggatcctgatgaaaatattcacctatctgtgccacctttgaaaagaccccttcgtatttcgtctttagctttct 4384373  T
Q  307 ccattgcttcataaatgaaaccggtggctggttcatcaattgaattgaccaaacgaag 364  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4384374 ccattgcttcataaatgaaaccggtggctggttcatcgattgaattgaccaaacgaag 4384431  T

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Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 207 - 364
Target Start/End: Original strand, 4376701 - 4376858
Alignment:
Q  207 caattataaaaactaatgttgataatcgatcctgctgaaaatatatacctttctatgccccctttagaaagaccccttcgtatttcatctttagctttct 306  Q
    ||||||||||| |||||||||||||| ||||||| ||||||||| ||||||||  |||| ||||  ||||||||||||||||||||||||||||||||||    
T  4376701 caattataaaagctaatgttgataatggatcctgatgaaaatatttacctttcggtgccaccttcggaaagaccccttcgtatttcatctttagctttct 4376800  T
Q  307 ccattgcttcataaatgaaaccggtggctggttcatcaattgaattgaccaaacgaag 364  Q
    |||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||    
T  4376801 ccattgcttcataaatgaaaccagtggctggttcatcgattgtattgaccaaacgaag 4376858  T

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Target: chr6; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 4376492 - 4376620
Alignment:
Q  1 tttaacttcaatatcatctccaaatgcatcgctatagtgaaactgagggttaagaaaatagcctgctgcatgcaaagggccatgtagtcgttcgtcccat 100  Q
    |||||||||||||||||||| |||  ||| |||||||||||||| |||||||||||||||||||| ||||||||||||||| || |||||||||||||||    
T  4376492 tttaacttcaatatcatctctaaacccattgctatagtgaaactcagggttaagaaaatagcctgttgcatgcaaagggccgtggagtcgttcgtcccat 4376591  T
Q  101 ctttcgtcaatgatctcccatagaggcat 129  Q
    |||||||||||||||||||||||||||||    
T  4376592 ctttcgtcaatgatctcccatagaggcat 4376620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 4384078 - 4384194
Alignment:
Q  13 atcatctccaaatgcatcgctatagtgaaactgagggttaagaaaatagcctgctgcatgcaaagggccatgtagtcgttcgtcccatctttcgtcaatg 112  Q
    |||||||| ||||  || ||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| |||||||||||| ||||||    
T  4384078 atcatctctaaatctatggctatagtgaaactgagggttaagaaaatagcctgctgcatgcaaggggccgtggagtcgtttgtcccatctttcatcaatg 4384177  T
Q  113 atctcccatagaggcat 129  Q
    |||||||||||||||||    
T  4384178 atctcccatagaggcat 4384194  T

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Target: chr6; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 230 - 360
Target Start/End: Complemental strand, 4415145 - 4415015
Alignment:
Q  230 aatcgatcctgctgaaaatatatacctttctatgccccctttagaaagaccccttcgtatttcatctttagctttctccattgcttcataaatgaaaccg 329  Q
    ||||||||||||   | |||| |||||||||||| | ||||| ||||||| ||||||||| || |||||||||| ||||| ||| ||||||||| |||||    
T  4415145 aatcgatcctgcaagacatatttacctttctatgacacctttggaaagactccttcgtatctcctctttagcttgctccaatgcctcataaatggaaccg 4415046  T
Q  330 gtggctggttcatcaattgaattgaccaaac 360  Q
    |||||||| ||||| |||||| |||||||||    
T  4415045 gtggctggctcatctattgaactgaccaaac 4415015  T

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Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 364
Target Start/End: Complemental strand, 5726138 - 5725996
Alignment:
Q  219 ctaatgttgataatcgatcctgctgaaaatatatacctttctatgccccctttagaaagaccccttcgtatttcatctttagctttctccattgcttcat 318  Q
    |||| ||||||| |||||||| ||||| || |||||||||||||||| | ||| |||||   |||  ||||    || ||||||||||||||||| || |    
T  5726138 ctaaagttgatactcgatcctactgaacatgtatacctttctatgccacttttggaaag---cctctgtatcaactccttagctttctccattgcctcgt 5726042  T
Q  319 aaatgaaaccggtggctggttcatcaattgaattgaccaaacgaag 364  Q
    ||||||||||  |||||||||| ||||||||| |||||||||||||    
T  5726041 aaatgaaacccatggctggttcgtcaattgaactgaccaaacgaag 5725996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 4369335 - 4369448
Alignment:
Q  1 tttaacttcaatatcatctccaaatgcatcgctatagtgaaactgagggttaagaaaatagcctgctgcatgcaaagggccatgtagtcgttcgtcccat 100  Q
    |||||||| || |||||||| |||| ||   ||||||||| | |||| |||||||||||||||||| ||||||||||||| ||| | | ||| |||||||    
T  4369335 tttaactttaacatcatctctaaatccaggactatagtgatattgagcgttaagaaaatagcctgcagcatgcaaagggctatggaattgtttgtcccat 4369434  T
Q  101 ctttcgtcaatgat 114  Q
    ||||| ||||||||    
T  4369435 ctttcatcaatgat 4369448  T

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Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 4364935 - 4365048
Alignment:
Q  1 tttaacttcaatatcatctccaaatgcatcgctatagtgaaactgagggttaagaaaatagcctgctgcatgcaaagggccatgtagtcgttcgtcccat 100  Q
    |||||||| || |||||||| |||| ||   ||||||||| | |||| ||||||||||||||| || ||||||||||||| ||| | | ||| |||||||    
T  4364935 tttaactttaacatcatctctaaatccaggactatagtgatattgagcgttaagaaaatagccagcagcatgcaaagggctatggaattgtttgtcccat 4365034  T
Q  101 ctttcgtcaatgat 114  Q
    ||||| ||||||||    
T  4365035 ctttcatcaatgat 4365048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 127
Target Start/End: Complemental strand, 5726346 - 5726221
Alignment:
Q  2 ttaacttcaatatcatctccaaatgcatcgctatagtgaaactgagggttaagaaaatagcctgctgcatgcaaagggccatgtagtcgttcgtcccatc 101  Q
    |||||||  |||||||||| |||| ||   ||||||||||| ||||||||||||||||||||||| |||| ||||||||  || ||| ||| ||||||||    
T  5726346 ttaactttgatatcatctctaaatccaggactatagtgaaattgagggttaagaaaatagcctgcggcatacaaagggctttggagttgtttgtcccatc 5726247  T
Q  102 tttcgtcaatgatctcccatagaggc 127  Q
     ||  || |||||||||  |||||||    
T  5726246 ctttatctatgatctcctgtagaggc 5726221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 4359567 - 4359637
Alignment:
Q  10 aatatcatctccaaatgcatcgctatagtgaaactgagggttaagaaaatagcctgctgcatgcaaagggc 80  Q
    ||||||||||| |||| ||   ||||||||||| ||||||||||||||||| ||||| |||||||||||||    
T  4359567 aatatcatctctaaatccaggactatagtgaaattgagggttaagaaaatatcctgcagcatgcaaagggc 4359637  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 325
Target Start/End: Original strand, 4365193 - 4365263
Alignment:
Q  255 ctttctatgccccctttagaaagaccccttcgtatttcatctttagctttctccattgcttcataaatgaa 325  Q
    ||||||||| | | ||| ||||||| ||| ||||| | |||||||||| |||||||||| |||||||||||    
T  4365193 ctttctatggcacttttggaaagactcctccgtatcttatctttagctctctccattgcctcataaatgaa 4365263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 3595684 - 3595557
Alignment:
Q  1 tttaacttcaatatcatctccaaatgcatcgctatagtgaaactgagggttaagaaaatagcctgctgcatgcaaagggccatgtagtcgttcgtcccat 100  Q
    |||| ||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||    
T  3595684 tttaccttcaatatcatctctaaatccatggctagagtgaaactgagggttaagaaaatagcctgctgcatgcaaagggccgtggagt-gttcgtcccat 3595586  T
Q  101 ctttcgtcaatgatctcccatagaggcat 129  Q
    ||||| |||||||||||||||||||||||    
T  3595585 ctttcatcaatgatctcccatagaggcat 3595557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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