View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15357_high_17 (Length: 349)
Name: NF15357_high_17
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15357_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 52 - 330
Target Start/End: Complemental strand, 433697 - 433418
Alignment:
| Q |
52 |
ataattctcgagacaaattgagaaggattgcgcttttttggaagccgagggaattatggattacagtcttttggtcgacattcattttcgtgatgataat |
151 |
Q |
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| T |
433697 |
ataattctcgagacaaattgagagggattgcgcttttttggaaaccgagggaattatggattacagtcttttggtcgacattcattttcgtgatgataat |
433598 |
T |
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| Q |
152 |
acttgtgacaaaaagggattatcaccatttttctgcgcactggtactcattaatatctcattttctgtgcatattgtagatgaatattatgtaatagtaa |
251 |
Q |
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| T |
433597 |
acttgtgacaaaacgggattatcaccatttttctgcgcactagtactcattaatatctcattttctgtgcatattgtagatgaatattatgtaatagtaa |
433498 |
T |
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| Q |
252 |
ttgaactaagacttgttatattgtttacccttttaggaaagcatgactcttatcagagtg-aaattttatgcgtagttat |
330 |
Q |
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| T |
433497 |
ttgaactaagacttgttatattgtttaccctttcaggaaagcatgactcttatcagagtgaaaagtttatgcgtagttat |
433418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 52 - 330
Target Start/End: Original strand, 32939152 - 32939430
Alignment:
| Q |
52 |
ataattctcgagacaaattgagaaggattgcgcttttttggaagccgagggaattatggattacagtcttttggtcgacattcattttcgtgatgataat |
151 |
Q |
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|||||| || ||||||||||||| |||||| || ||||||||||| || |||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
32939152 |
ataattgtccagacaaattgagagggattgtgcgtttttggaagctgaaggaattatggattacagtcttttggtcggcgttcattttcgtgatgataat |
32939251 |
T |
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| Q |
152 |
acttgtgacaaaaagggattatcacca-tttttctgcgcactggtactcattaatatctcattttctgtgcatattgtagatgaatattatgtaatagta |
250 |
Q |
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| T |
32939252 |
acttgtgacaaaatgggattatcaccattttttttgcgcaccggtactcattaacatctca-tttctgtgcatattgtagatgaatattat-taatagta |
32939349 |
T |
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| Q |
251 |
attgaactaagacttgttatattgtttacccttttaggaaagcatgactcttatcagagtg-aaattttatgcgtagttat |
330 |
Q |
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|| |||||||||||| ||||||||||||||||| |||| ||||| ||||||||||| |||| ||| ||||||||| ||||| |
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| T |
32939350 |
atagaactaagacttattatattgtttacccttataggcaagcacgactcttatcaaagtgaaaagtttatgcgtggttat |
32939430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 196
Target Start/End: Original strand, 24525296 - 24525431
Alignment:
| Q |
62 |
agacaaattgagaaggattgcgcttttttggaagccgagggaattatggattacagtcttttggtcgacattcattttcgtgatgataatacttgtgaca |
161 |
Q |
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|||||||||||| |||||| | || |||||| |||| ||||||||| |||||||||||||| | | |||||||||||||||| || |||| |||| |
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| T |
24525296 |
agacaaattgagcgggattgtgagttcttggaaaacgagaaaattatggactacagtcttttggttggccttcattttcgtgatgacaacacttacgaca |
24525395 |
T |
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| Q |
162 |
aaaagggattatcaccattt-ttctgcgcactggta |
196 |
Q |
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||| ||| || ||||| ||| |||| |||||||||| |
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| T |
24525396 |
aaatggggttgtcaccttttcttctacgcactggta |
24525431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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