View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15357_high_21 (Length: 320)
Name: NF15357_high_21
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15357_high_21 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 320
Target Start/End: Original strand, 46666406 - 46666712
Alignment:
| Q |
14 |
tactatgaatctaagcatgcacaaagtcttaccgtgcggttgttaacaagatcctcgtagtaaagaacaacgtgtcgaatgctcttaaaatatgatatgg |
113 |
Q |
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| T |
46666406 |
tactatgaatctaagcatgcacaaagtcttaccgtgcggttgttaacaagatcctcgtagtaaagaacaatgtgtcgaatgcttttaaaatatgatatgg |
46666505 |
T |
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| Q |
114 |
cttttgcaattgtctcatttgttttctttagttctggtatcaataacgtgacattgatttttggcttatactttgcaagaattgtagcctgcagaagcat |
213 |
Q |
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| T |
46666506 |
cttttgcaattgtctcatttgttttctttagttctggtatcaataacgtgacattgatttttggcttatactttgcaagaattgtagcctgcagaagcat |
46666605 |
T |
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| Q |
214 |
aacaggatcagatttaaaaccaaaaaagattatagcaagaaagagtgaaaaaatcagtgacctccattgtagagtgcacatgagacttgtgtgttccatt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46666606 |
aacaggatcagatttaaaaccaaaaaagattatagcaagaaagagtgaaaaaatcagtgacctccattgtagagtgcacatgagacttgtgtgttccatt |
46666705 |
T |
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| Q |
314 |
caatagc |
320 |
Q |
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| T |
46666706 |
caatagc |
46666712 |
T |
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