View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15357_high_22 (Length: 318)
Name: NF15357_high_22
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15357_high_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 2 - 301
Target Start/End: Original strand, 35566816 - 35567115
Alignment:
| Q |
2 |
tttgttttaatttgttgaaaagaatcacattaataattaacaggaaaactatcgtcaaggttaaaaacagatgctccgttcaagtatggatagaatctgc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35566816 |
tttgttttaatttgttgaaaagaatcacattaataattaacaggaaaactatcgtcaaggttaaaaacagatgctccgttcaagtatggatagaatctgc |
35566915 |
T |
|
| Q |
102 |
tttttaacaccnnnnnnngtattagtaaaatctaaatttcaactgcagcagacatgcaagtacacatactgtttcaaaatagaatgcaatcgaagagtaa |
201 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35566916 |
tttttaacaccaaaaaaagtattagtaaaatctaaatttcaactgcagcagacatgcaagtacacatactgtttcaaaatagaatgcaatcgaagagtaa |
35567015 |
T |
|
| Q |
202 |
ctgacatgtaacaaacatacgatacaagtatgttcttctgctgtcagatgcaagccatagagattagatataacctgacatatgtatttggagtgggatt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35567016 |
ctgacatgtaacaaacatacgatacaagcatgttcttctgctgtcagatgcaagccatagagattagatataacctgacatatgtatttggagtgggatt |
35567115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 2 - 301
Target Start/End: Complemental strand, 32203172 - 32202872
Alignment:
| Q |
2 |
tttgttttaatttgttgaaaagaatcacattaataattaacaggaaaactatcgtcaaggttaaaaacagatgctccgttcaagtatggatagaatctgc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32203172 |
tttgttttaatttgttgaaaagaatcacattaataattaacaggaaaactatcgtcaaggttaaaaacagatgctccgttcaagtatggatagaatctgc |
32203073 |
T |
|
| Q |
102 |
tttttaacaccnnnnnnn-gtattagtaaaatctaaatttcaactgcagcagacatgcaagtacacatactgtttcaaaatagaatgcaatcgaagagta |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32203072 |
tttttaacaccaaaaaaaagtattagtaaaatctaaatttcaactgcagcaaacatgcaagtacacatactgtttcaaaatagaatgcaatcgaagagta |
32202973 |
T |
|
| Q |
201 |
actgacatgtaacaaacatacgatacaagtatgttcttctgctgtcagatgcaagccatagagattagatataacctgacatatgtatttggagtgggat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32202972 |
actgacatgtaacaaacatacgatacaagcatgttcttctgctgtcggatgcaagccatagagattagatataacctaacatatgtatttggagtgggat |
32202873 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
|
|
| T |
32202872 |
t |
32202872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University