View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15357_high_38 (Length: 231)
Name: NF15357_high_38
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15357_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 31790105 - 31790301
Alignment:
| Q |
19 |
caatattataagcatgacatatccaggtctgttactatatttgttgaacctttatttaatttcattgtacagtataattcatagactggtaaaatatatt |
118 |
Q |
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| T |
31790105 |
caatattataagcatgacatatccaggtctgttactatatttgttgaacctttatttaatttcattgtacagtataattcataaactggtaaaatatatt |
31790204 |
T |
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| Q |
119 |
taatggttttccaatctcagcgttagattcactggagggtataagtcctactcttgaaaggaaaattatattttcaaacaaactcatcgagcttctt |
215 |
Q |
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| T |
31790205 |
taatggttttccaatctcagcgttagattcactggagggtataagtcctactcttgaaaggaaaattatattttcaaacaaactcatcgagcttctt |
31790301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 27 - 215
Target Start/End: Original strand, 31785167 - 31785352
Alignment:
| Q |
27 |
taagcatgacatatcca-ggtctgttactatatttgttgaacctttatttaatttcattgtacagtataattcatagactggtaaa-atatatttaatgg |
124 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
31785167 |
taagcatgacatatccaaggtctgttactatatttgttgaacctttaatt-----cattgtacagtataattcatagactggtaaacaaatatttaatgg |
31785261 |
T |
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| Q |
125 |
ttttccaatctcagcgttagattcactggagggtataagtcctactcttgaaaggaaaattatattttcaaacaaactcatcgagcttctt |
215 |
Q |
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| T |
31785262 |
ttttccaatctcagcgttagattcactggagggtataagtcctactctagaaaggaaaattatattttcaaacaaactcatcaagcttctt |
31785352 |
T |
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