View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15357_high_4 (Length: 496)
Name: NF15357_high_4
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15357_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 17 - 490
Target Start/End: Original strand, 5469121 - 5469596
Alignment:
| Q |
17 |
cttcaatgagctatcatatgtaggcaacctagggctttgtggggatcctttgccaactaattgctaatcattgtcaccaggaaatgtagagcaagacaaa |
116 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5469121 |
cttcaatgagctatcatatgtaggcaaccaagggctttgtggggatcctttgccaactaattgctcatcattgtcaccaggaaatgtagagcaagacaaa |
5469220 |
T |
|
| Q |
117 |
aaacatgaagatggtgcagatgaagatgacaatagtgaaagattgggattatatgcaagcatagcagtcgggtatattactggcttctggattgtgtgtg |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5469221 |
aaacatgaagatggtgcagatgaagatgacaacagtgaaagattgggattatatgcaagcatagcagtcgggtatattactggcttctggattgtgtgtg |
5469320 |
T |
|
| Q |
217 |
gaagcttgatgttaaagaggtcttggagacatgcgtatttcaatttcatgtatgacac--gagataaacttctggttttcatggcggttaatttaacgcg |
314 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| || |
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| T |
5469321 |
gaagcttgatgttaaagaggtcttggagacatgcgtatttcaatttcatgtatgacacaagagataaagttctggttttcatggcggttaatttaatgca |
5469420 |
T |
|
| Q |
315 |
tctaaagcgcaggtttggatcggaaaggaactgatgccgtagtatgtggtatcttttgtttgaactttgtaatcgttcttggttatattttgcttctgta |
414 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5469421 |
tctaaagcgcaggtttggatcggaaaggaactgatgcggtagtatgtggtatcttttgtttgaactttgtaatcgttcttggttatattttgcttctgta |
5469520 |
T |
|
| Q |
415 |
gattgaaggaacttaaacaatggttgtttacaagttattatataatatgctatttaagttacaactttcatctctc |
490 |
Q |
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| T |
5469521 |
gattgaaggaacttaaacaatggttgtttacaagttattatataatatgctatttaagttacaactttcatctctc |
5469596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 17 - 352
Target Start/End: Original strand, 5502695 - 5503035
Alignment:
| Q |
17 |
cttcaatgagctatca---tatgtaggcaacctagggctttgtggggatcctttgccaactaattgctaatcattgtcaccaggaaatgtagagcaagac |
113 |
Q |
| |
|
||||||||||| |||| |||| |||||||| ||||||||||| |||||||||||||| |||||| |||||||||||| ||||||| |||| ||||| |
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| T |
5502695 |
cttcaatgagccatcaatttatgaaggcaacccggggctttgtggacatcctttgccaactgattgctcatcattgtcacctggaaatggagagaaagac |
5502794 |
T |
|
| Q |
114 |
aaaaaacatgaagatggtgcagatgaagatgacaatagtgaaagattgggattatatgcaagcatagcagtcgggtatattactggcttctggattgtgt |
213 |
Q |
| |
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| T |
5502795 |
agaaaacatgaagatggtgtagatagcgatgacgacaatgaaagattgggattatacacaagcatagttgtcgggtatattactggcttctggattgtgt |
5502894 |
T |
|
| Q |
214 |
gtggaagcttgatgttaaagaggtcttggagacatgcgtatttcaatttcatgtatgac--acgagataaacttctggttttcatggcggttaatttaac |
311 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||| |||||||||||||| |||| ||||| ||||| ||| | |
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| T |
5502895 |
gtggaagcttggtgttaaagaggtcttggagacatgcatatttcaattttgtatatgacctgagagataaacttctgattttgatggcagttaacttagc |
5502994 |
T |
|
| Q |
312 |
gcgtctaaagcgcaggtttggatcggaaaggaactgatgcc |
352 |
Q |
| |
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||||||||||| |||||||| ||||||||||||||||| |
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| T |
5502995 |
acgtctaaagcgtgtgtttggattggaaaggaactgatgcc |
5503035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 5486881 - 5487142
Alignment:
| Q |
17 |
cttcaatgagctatcatatgtaggcaacctagggctttgtggggatcctttgccaactaattgctaatcattgtcaccaggaaatgtagagcaagacaaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||| |||||||||| |||||||||| |||| ||| ||| ||||||| ||| ||||||| | |
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|
| T |
5486881 |
cttcaatgagctatcatatgtaggcaatgcaggactttgtggccatcctttgccgactaattgctcatcaatgttacctggaaatggagaacaagacaga |
5486980 |
T |
|
| Q |
117 |
aaacatgaagatggtgcagatgaagatgacaatagtgaaagattgggattatatgcaagcatagcagtcgggtatattactggcttctggattgtgtgtg |
216 |
Q |
| |
|
|||||| ||||||||| |||| |||||| | | ||||||||||||||| |||||||||||||| |||||||||| ||||| |||||||||||||||| |
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| T |
5486981 |
aaacataaagatggtgttgatggagatgatgacaatgaaagattgggattgtatgcaagcatagctatcgggtatataactggtttctggattgtgtgtg |
5487080 |
T |
|
| Q |
217 |
gaagcttgatgttaaagaggtcttggagacatgcgtatttcaatttcatgtatgacacgaga |
278 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||| |||| |
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| T |
5487081 |
gaagcttggtgttaaagaggtcttggagacatgcatatttcaattttttgtatgacatgaga |
5487142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 75 - 355
Target Start/End: Original strand, 5491939 - 5492224
Alignment:
| Q |
75 |
aattgctaatcattgtcaccaggaaatgtagagcaagacaaaaaacatgaagatggtgcagatg---aagatgacaatagtgaaagattgggattatatg |
171 |
Q |
| |
|
||||||| |||||||| || ||||||| ||| ||||| | ||||||| ||||| ||| ||||| | |||||||| ||||||||| |||||||||| |
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|
| T |
5491939 |
aattgctcatcattgttgcctggaaatggagaacaagaaataaaacatcaagatagtgaagatggggatgatgacaaggctgaaagatttggattatatg |
5492038 |
T |
|
| Q |
172 |
caagcatagcagtcgggtatattactggcttctggattgtgtgtggaagcttgatgttaaagaggtcttggagacatgcgtatttcaatttcatgtatga |
271 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||| | ||||| |
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| T |
5492039 |
caagcatagcagtcgggtatattaccggcttctggattgtgtgtggaagcttaatgctaaagaggtcttggagacatgcatatttcaattttgtatatga |
5492138 |
T |
|
| Q |
272 |
cac--gagataaacttctggttttcatggcggttaatttaacgcgtctaaagcgcaggtttggatcggaaaggaactgatgccgta |
355 |
Q |
| |
|
||| ||||||||||||||||||| ||||| |||||||| ||||||||||||||| |||||||| |||||| |||| || ||||| |
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| T |
5492139 |
cacaagagataaacttctggttttgatggcaattaatttaccgcgtctaaagcgcaagtttggattggaaagcaactaataccgta |
5492224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 75 - 305
Target Start/End: Original strand, 5497712 - 5497944
Alignment:
| Q |
75 |
aattgctaatcattgtcaccaggaaatgtagagcaagacaaaaaacatgaagatggtgcagatgaagatgacaatagtgaaagattgggattatatgcaa |
174 |
Q |
| |
|
||||||| |||||||||||| ||| ||| ||| ||||| | |||||||||||||||| |||| ||||||||| | |||||||| |||||||||||||| |
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|
| T |
5497712 |
aattgctcatcattgtcacctggacatggagaacaagaaaggaaacatgaagatggtgttgatggagatgacaacaatgaaagatggggattatatgcaa |
5497811 |
T |
|
| Q |
175 |
gcatagcagtcgggtatattactggcttctggattgtgtgtggaagcttgatgttaaagaggtcttggagacatgcgtatttcaatttcatgtatgacac |
274 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| |
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|
| T |
5497812 |
gcatagcagttgggtatatcactggcttctggattgtgtgtggaagcttgatgttaaagaggtcttggagacatgcatatttcaattctgtatatgacat |
5497911 |
T |
|
| Q |
275 |
g--agataaacttctggttttcatggcggttaa |
305 |
Q |
| |
|
| |||||||||||||||||| || |||||||| |
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|
| T |
5497912 |
gaaagataaacttctggttttgattgcggttaa |
5497944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 33 - 348
Target Start/End: Original strand, 5478792 - 5479110
Alignment:
| Q |
33 |
tatgtaggcaacctagggctttgtggggatcctttgccaactaattgctaatcattgtcaccaggaaatgtagagcaagacaaaaaacatgaagatggtg |
132 |
Q |
| |
|
|||| |||||||| |||||||||||| | ||| |||||||||||||| |||||||| || ||||||| ||| |||| | |||| | ||||||||| |
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|
| T |
5478792 |
tatgaaggcaacccggggctttgtgggtaccct--gccaactaattgctcatcattgttacatggaaatggagaagaagaaagaaaatacaaagatggtg |
5478889 |
T |
|
| Q |
133 |
cagatg---aagatgacaatagtgaaagattgggattatatgcaagcatagcagtcgggtatattactggcttctggattgtgtgtggaagcttgatgtt |
229 |
Q |
| |
|
|||| | ||||| || | |||||| ||||| |||||||||||||||| ||||||||||| |||||||| |||||||||||||||||| ||||||| |
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|
| T |
5478890 |
atgatggggacgatgaaaagactgaaaggttggggttatatgcaagcatagatgtcgggtatatcactggcttttggattgtgtgtggaagcatgatgtt |
5478989 |
T |
|
| Q |
230 |
aaagaggtcttggagacatgcgtatttcaatttcatgtatgacac--gagataaacttctggttttcatggcggttaatttaacgcgtctaaagcgcagg |
327 |
Q |
| |
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||||||||||||||||||||| ||||||||||| | ||||| || ||||||||||| |||| || |||| ||||||||| ||||| ||||||| ||| |
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|
| T |
5478990 |
aaagaggtcttggagacatgcatatttcaattttgtatatgaaaccagagataaacttatggtcttgatggtggttaatttggcgcgtgtaaagcgtagg |
5479089 |
T |
|
| Q |
328 |
tttggatcggaaaggaactga |
348 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
5479090 |
tttggattggaaaggaactga |
5479110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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