View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15357_high_7 (Length: 426)
Name: NF15357_high_7
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15357_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 23 - 411
Target Start/End: Original strand, 28309655 - 28310046
Alignment:
| Q |
23 |
tgtacgtagttgataataggtattcaataaataatgtagttgtgagccaatgctaat---ataatgcatttaagttaatctttctctcggtctcacaaag |
119 |
Q |
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| T |
28309655 |
tgtacgtagttgataataggtattcaataaataatgtagttgtgagccaatgctaataatataatgcattcaagttaatctttctctcggtctcacaaag |
28309754 |
T |
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| Q |
120 |
cctattttctttctttccagtttgcattcattccagttgaatcttcatcttcctcttctcaaacaatgtctgctcctcacggtggctcccttcctccgtc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || |
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| T |
28309755 |
cctattttctttctttccagtttgcattcattccagttgaatcttcatcttcctcttctcaaacaatgtctactcctcaccatggctcccttcctccttc |
28309854 |
T |
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| Q |
220 |
ttcctcggctcctatcatagtggctacggctgggtggatgctgaagctcagcctgtctcttgtggccacaacaacactgctagcattttcactagcaata |
319 |
Q |
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||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28309855 |
ttcctcggctcctatcacagtggctacggccgggtggatgttgaagctcagcctgtctcttatggccacaacaacactgctagcattttcactagcaata |
28309954 |
T |
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| Q |
320 |
ttctcctcctcccttgtaaacacatgttgcaaaaaccaaattgtgggactcacgattttctcgaacttttcattctttgcaagtatcttcat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28309955 |
ttctcctcctcccttgtaaacacatgttgcaaaaaccaaattgtgggactcacgattttctcgaacttttcattctttgcaagtatcttcat |
28310046 |
T |
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