View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15357_high_8 (Length: 415)
Name: NF15357_high_8
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15357_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 2 - 399
Target Start/End: Complemental strand, 4258841 - 4258445
Alignment:
| Q |
2 |
agatgaaaatcagagggaatctcacttagtttgggaatagacaccatttcaattagtttaagggcaggtaaagttccattgtctattaaaatggaattca |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4258841 |
agatgaaaatcagagggaatctcacttagtttgggaatagacaccatttcaattagtttaagggcaggtaaagttccgttgtctattaaaatggaattca |
4258742 |
T |
|
| Q |
102 |
agttattcaactgcacaagatatagtttgttcaacttcttaaacccaacttggaagtgcaacatttctccatcatatgcaacgcacacaattgcaagacg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4258741 |
agttattcaactgcacaagatatagtttgttcaacttcttaaacccaacttggaagtgcaacatttctccatcatatgcatcgcacacaattgcaagacg |
4258642 |
T |
|
| Q |
202 |
cagcaacttttggcaaatctttgagtaactttaaaggatcgtccttcaacttggaaaagcgaatcgacagtctaacaagttgttcaagtcttggaaccca |
301 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4258641 |
cagcaa-gtttggcaaatctttgagtaactttaaaggatcgtccttcaacttggaaaagcgaatcgacagtctaacaagttgttcaagtcttggaaccca |
4258543 |
T |
|
| Q |
302 |
atttggaagcttttctaaacgaccgaacaagtgaagttgtctaagttgaggtagagatgaaataaattgcaagtctatgacttcattttcatttattg |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4258542 |
atttggaagcttttctaaacgaccgaacaagtgaagttgtctaagttgaggtagagatgaaataaattgcaagtctatgacttcattttcatttattg |
4258445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 2 - 399
Target Start/End: Complemental strand, 4262463 - 4262067
Alignment:
| Q |
2 |
agatgaaaatcagagggaatctcacttagtttgggaatagacaccatttcaattagtttaagggcaggtaaagttccattgtctattaaaatggaattca |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4262463 |
agatgaaaatcagagggaatctcacttagtttgggaatagacaccatttcaattagtttaagggcaggtaaagttccgttgtctattaaaatggaattca |
4262364 |
T |
|
| Q |
102 |
agttattcaactgcacaagatatagtttgttcaacttcttaaacccaacttggaagtgcaacatttctccatcatatgcaacgcacacaattgcaagacg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4262363 |
agttattcaactgcacaagatatagtttgttcaacttcttaaacccaacttggaagtgcaacatttctccatcatatgcatcgcacacaattgcaagacg |
4262264 |
T |
|
| Q |
202 |
cagcaacttttggcaaatctttgagtaactttaaaggatcgtccttcaacttggaaaagcgaatcgacagtctaacaagttgttcaagtcttggaaccca |
301 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4262263 |
cagcaa-gtttggcaaatctttgagtaactttaaaggatcgtccttcaacttggaaaagcgaatcgacagtctaacaagttgttcaagtcttggaaccca |
4262165 |
T |
|
| Q |
302 |
atttggaagcttttctaaacgaccgaacaagtgaagttgtctaagttgaggtagagatgaaataaattgcaagtctatgacttcattttcatttattg |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4262164 |
atttggaagcttttctaaacgaccgaacaagtgaagttgtctaagttgaggtagagatgaaataaattgcaagtctatgacttcattttcatttattg |
4262067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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