View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15357_low_1 (Length: 655)
Name: NF15357_low_1
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15357_low_1 |
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| [»] scaffold0024 (2 HSPs) |
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| [»] scaffold0742 (2 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 575; Significance: 0; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 18 - 645
Target Start/End: Complemental strand, 122398 - 121771
Alignment:
| Q |
18 |
gaaaatcccatccagcctgaacctggagcctgcaagggacttgacttatttgaaataatttatgtaatcttacttaatgatatactagtcatattgcaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
122398 |
gaaaatcccatccagcctgaacctggagcctgcaagggacttgacttatttgaaataatttatgtaatcttacttaatgatatactagtcatattgcaaa |
122299 |
T |
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| Q |
118 |
agaatacagccatacaattcagtataaacacaacatcaacactaacacataatagggaaactaagcatacaagtgtcagtcaaaatagtcatcaactaac |
217 |
Q |
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| T |
122298 |
agaatacagccatacaattcagtataaacacaacatcaacactaacacataatagggaaactaagcatacaagtgtcagtcaaaatagtcatcaattaac |
122199 |
T |
|
| Q |
218 |
tttacaattaccccaggtcataatagggagactatacgattactccaggtcgatcccacattaatgtcatcacatcggagactaattttcaaataaactt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
122198 |
tttacaattaccccaggtcataatagggagactatacgattactccaggtcgatcccacattaatgtcatcacatcggagactaattttcaaataaactt |
122099 |
T |
|
| Q |
318 |
agatctctcatggagtaattttcaagtagtcagtgtatgcacaattgcaattactnnnnnnngttgtccttgagctaacattaatatgggatcaatgtga |
417 |
Q |
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| T |
122098 |
agatctctcatggagtaattttcaagtagtcagtgtatgcacaattgcaattactaaaaaaagttgtccttgagctaacattaatatgggatcaatgtga |
121999 |
T |
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| Q |
418 |
atcatgacatgtcctaataacaagtcacatcatagcctctaacaatagggatcaaataaatttgatcgatgcttatgattttgaggactaatttactttt |
517 |
Q |
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| T |
121998 |
atcatgacatgtcctaataacaagtcacatcataacctctaacaatagagataaaataaatttgatcgatgcttatgattttgaggactaatttattttt |
121899 |
T |
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| Q |
518 |
cactctataaatgttattgaaaaaatagattgtcgatattggtcaatctccgccactggcaagacagaattatgagatatcaagacttacatgaggtaaa |
617 |
Q |
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| T |
121898 |
cactctataaatgttattgaaaaaatagattgtcgatattgatcaatctccgccactggcaagacagaattatgagatatcaagacttacatgaggtaaa |
121799 |
T |
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| Q |
618 |
gactggaatatcatttagctgatgatgt |
645 |
Q |
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| T |
121798 |
ggctggaatatcatttagctgatcatgt |
121771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 587 - 645
Target Start/End: Complemental strand, 114999 - 114940
Alignment:
| Q |
587 |
ttatgagatatcaagacttacatgaggtaaagactgga-atatcatttagctgatgatgt |
645 |
Q |
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| T |
114999 |
ttatgacagatcaagacttacatgaggtaaagactggatgtatcatttagctgatcatgt |
114940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0742 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: scaffold0742
Description:
Target: scaffold0742; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 247 - 588
Target Start/End: Complemental strand, 947 - 614
Alignment:
| Q |
247 |
gactatacgattactccaggtcgatcccacattaatgtcatcacatcggagactaattttcaaataaacttagatctctcatggagtaattttcaagtag |
346 |
Q |
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||||||||||| ||||||||| ||||||||||||| ||||||||| | ||||||||||||| |||||||||||||||||| |||||| | ||||||| |
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| T |
947 |
gactatacgatcactccaggttgatcccacattaaaatcatcacattgaagactaattttcatataaacttagatctctcaaagagtaactg-caagtag |
849 |
T |
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| Q |
347 |
tcagtgtatgcacaattgcaattactnnnnnnngttgtccttgagctaacattaatatgggatcaatgtgaatcatgacatgtcctaataacaagtcaca |
446 |
Q |
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| T |
848 |
ttagtgcatgcacaattgcgatcactaaaaatt-ttgtccttgagctaacatttatatgggatcaatgtgaatcatgacatgt------aacatatcaca |
756 |
T |
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| Q |
447 |
tcatagcctctaacaatagggatcaaataaatttgatcgatgcttatgattttgaggactaatttacttttcactctataaatgttatt-gaaaaaatag |
545 |
Q |
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| T |
755 |
acataacctctaacaatagggataaaa-aaatttgattgatgcttatgatttcgaggactagtttacttttcattctataaatgttattataaaaagtag |
657 |
T |
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| Q |
546 |
attgtcgatattggtcaatctccgccactggcaagacagaatt |
588 |
Q |
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| T |
656 |
attgtggatatcgatcaatctttgccactgacaagacaaaatt |
614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0742; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 1057 - 1021
Alignment:
| Q |
116 |
aaagaatacagccatacaattcagtataaacacaaca |
152 |
Q |
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| T |
1057 |
aaagaatacatccatacaatttagtataaacacaaca |
1021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 24124048 - 24123956
Alignment:
| Q |
20 |
aaatcccatccagcctgaacctggagcctgcaagggacttgacttatttgaaataatttatgtaatcttacttaatgatatactagtcatatt |
112 |
Q |
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| T |
24124048 |
aaatctcatctaacctaaacttggagcctgcaagggacacgacttatctgaaataatatgtgtaatcatgcttaaacatattctaatcatatt |
24123956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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