View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15357_low_10 (Length: 392)

Name: NF15357_low_10
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15357_low_10
NF15357_low_10
[»] chr2 (2 HSPs)
chr2 (19-382)||(5483247-5483622)
chr2 (306-360)||(5480876-5480930)
[»] chr5 (1 HSPs)
chr5 (31-77)||(22615135-22615181)
[»] chr1 (1 HSPs)
chr1 (30-76)||(20990302-20990348)
[»] chr3 (1 HSPs)
chr3 (257-358)||(32026793-32026894)
[»] scaffold0025 (1 HSPs)
scaffold0025 (34-75)||(36950-36991)
[»] chr6 (1 HSPs)
chr6 (33-77)||(18288272-18288314)
[»] chr4 (2 HSPs)
chr4 (31-75)||(28201398-28201440)
chr4 (30-75)||(32402626-32402671)
[»] scaffold0036 (1 HSPs)
scaffold0036 (39-75)||(58008-58044)


Alignment Details
Target: chr2 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 19 - 382
Target Start/End: Original strand, 5483247 - 5483622
Alignment:
Q  19 atttgacct-taatataatataacatgagaaagttaaattgttcaattcacaacaaaacagtattacaatnnnnnnnnnnnnnnnnnnnnnnncttgttt 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                       |||||||    
T  5483247 atttgacctataatataatataacatgagaaagttaaattgttcaattcacaacaaaacagtattacaataaaaaaaaattaaaagtaaaaaacttgttt 5483346  T
Q  118 ggttactggaacaaataaacacatatgcatgctaaaaaatgggaacagnnnnnnntgtttcgacgtgtgtcacaccggccggtccctatcttgtacagtc 217  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||       |||||||||||||||||||||||    ||||||||||||||||||    
T  5483347 ggttactggaacaaataaacacatatacatgctaaaaaatgggaaaagaaaaaa-tgtttcgacgtgtgtcacaccgg----tccctatcttgtacagtc 5483441  T
Q  218 gttttacaattattcatgcttca----------------agtttcgctaccaatgaaaacaagaagtgtgtcaaggaggactctcttaaaataataaaca 301  Q
    |||  ||||||||||||||||||                ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5483442 gtt--acaattattcatgcttcagagattattttagacaagtttcgctaccaatgaaaacaaaaagtgtgtcaaggaggactctcttaaaataataaaca 5483539  T
Q  302 -ttta-gacttaatttattttacagcattgccgtgactttgaggctgccaatttcaaatatctaacctagtcaatgacctttg 382  Q
     |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5483540 atttatgacttcatttattttacagcattgccgtgactttgaggctgccaatttcaaatatctaacttagtcaatgacctttg 5483622  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 360
Target Start/End: Original strand, 5480876 - 5480930
Alignment:
Q  306 gacttaatttattttacagcattgccgtgactttgaggctgccaatttcaaatat 360  Q
    ||||| |||||||||| | ||||||||||||||||| ||||| ||| ||||||||    
T  5480876 gacttgatttattttataacattgccgtgactttgaagctgctaatatcaaatat 5480930  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 22615135 - 22615181
Alignment:
Q  31 tataatataacatgagaaagttaaattgttcaattcacaacaaaaca 77  Q
    |||||| |||||||||| || ||||||||||||||||||||||||||    
T  22615135 tataatgtaacatgagagagctaaattgttcaattcacaacaaaaca 22615181  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 20990302 - 20990348
Alignment:
Q  30 atataatataacatgagaaagttaaattgttcaattcacaacaaaac 76  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||||||    
T  20990302 atataatataacatgagaaagctaaattcttcaatttacaacaaaac 20990348  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 358
Target Start/End: Complemental strand, 32026894 - 32026793
Alignment:
Q  257 aaaacaagaagtgtgtcaaggaggactctcttaaaataataaacattta--gacttaatttattttacagcattgccgtgactttgaggctgccaatttc 354  Q
    |||||||||||||||||||| |||| | |  |||||||||||||  ||   ||||| |||||||||| | ||||| ||||||||||||||||| ||| ||    
T  32026894 aaaacaagaagtgtgtcaagaaggattgt--taaaataataaacggttgatgacttgatttattttataacattgtcgtgactttgaggctgctaatatc 32026797  T
Q  355 aaat 358  Q
    ||||    
T  32026796 aaat 32026793  T

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Target: scaffold0025 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 36991 - 36950
Alignment:
Q  34 aatataacatgagaaagttaaattgttcaattcacaacaaaa 75  Q
    |||||||||||| | ||||||||| |||||||||||||||||    
T  36991 aatataacatgaaagagttaaattcttcaattcacaacaaaa 36950  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 18288272 - 18288314
Alignment:
Q  33 taatataacatgagaaagttaaattgttcaattcacaacaaaaca 77  Q
    ||||||||||||||||   ||||||||||||||||||||||||||    
T  18288272 taatataacatgagaag--taaattgttcaattcacaacaaaaca 18288314  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 28201440 - 28201398
Alignment:
Q  31 tataatataacatgagaaagttaaattgttcaattcacaacaaaa 75  Q
    |||||||||||||||||  | ||||||||||||||||||||||||    
T  28201440 tataatataacatgaga--gctaaattgttcaattcacaacaaaa 28201398  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 32402626 - 32402671
Alignment:
Q  30 atataatataacatgagaaagttaaattgttcaattcacaacaaaa 75  Q
    |||| ||||||||||| | || ||||||||||||||||||||||||    
T  32402626 atatgatataacatgaaagagctaaattgttcaattcacaacaaaa 32402671  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 58008 - 58044
Alignment:
Q  39 aacatgagaaagttaaattgttcaattcacaacaaaa 75  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  58008 aacatgagaaagctaatttgttcaattcacaacaaaa 58044  T

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