View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15357_low_11 (Length: 389)
Name: NF15357_low_11
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15357_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 36899128 - 36898793
Alignment:
| Q |
1 |
atgtaagaaaatttagaataatgtggtaaggttttataattgaggaatgagtgaagaggtctgcaagaaatcttatgggaagttggttag---gtagata |
97 |
Q |
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| T |
36899128 |
atgtaagaaaatttggaataatgtggtaaggttttataattgaggaatgagtgaagaggtctgcaagaaatcttatgggaagttggttagatagtagata |
36899029 |
T |
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| Q |
98 |
ccatagacgtgggtctgcccaaaatattcaatccgtaatgattcttgagatgtatgttttttagcacaagttgtaattgataattaaggtactatcaatt |
197 |
Q |
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| T |
36899028 |
ccatagacgtgggtctgcccaaaatattcaatccgtaatgattcttgagatgtatgatttttagcacaagttgtaattgataattaaggtactatcaatt |
36898929 |
T |
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| Q |
198 |
tatgataatactagtattatgatagtggttcaagttaaactccaccagttctaaattgtcgatagtacatttgactttaaatttggtttcatgacaccgg |
297 |
Q |
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| T |
36898928 |
tatgataatactagtattatgatagtggttcaagttaaactccaccagttctaaattgtcgatagtacatttgactttaaatttggtttcatggcaccag |
36898829 |
T |
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| Q |
298 |
cttcgcatgtatgccttagtgttaagccattaccta |
333 |
Q |
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| T |
36898828 |
cttcgcacgtatgcctgagtgctaacccatttccta |
36898793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 37009132 - 37009197
Alignment:
| Q |
10 |
aatttagaataatgtggtaaggttttataattgaggaatgagtgaagaggtctgcaagaaatctta |
75 |
Q |
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| T |
37009132 |
aatttggaatgatgtggtaaggttttataattgaggagtgagtgaagaggcctgcaagaaatctta |
37009197 |
T |
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