View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15357_low_12 (Length: 388)
Name: NF15357_low_12
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15357_low_12 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 13 - 388
Target Start/End: Complemental strand, 28310398 - 28310023
Alignment:
| Q |
13 |
agatgaacataaggtaaatattgtcttcaacaaaaattaaaattaagtaatatgagataaaacactaaaatatatctagttaatttgagtacaatctctt |
112 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28310398 |
agatgaacgtaaggtaaatattgtcttcaacagaaattaaaattaagtaatatgagataaaatactaaaatatatctagttaatttgagtacaatctctt |
28310299 |
T |
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| Q |
113 |
tcttagaaatccaactaaagtactagacatattacttttatttttgtttcatgaacctacaaattaacatgaaaagcaaatgcacccttttctctctaac |
212 |
Q |
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| T |
28310298 |
tcttagaaatccaactaaagtactagacatattactttaatttttgtttcatgaacctacaaattaacatgaaaagcaaatgcacccttttctctctaac |
28310199 |
T |
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| Q |
213 |
aagcatcctacaccaacaatgagaagacaatgaagagggaacacaagccacatacaacattataaatccaaagtatcatatcagcccaaaggcagctggt |
312 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
28310198 |
aagcatcctacaccaacaatgagaagacagtgaagaggtggcacaagccacatacaacattataaacccaaagtatcatatcaacccaaaggcagctggt |
28310099 |
T |
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| Q |
313 |
cctggtcttgtaaatgtttggtgcaccgaggtcgcttttgaggccatgagacatgaagatacttgcaaagaatgaa |
388 |
Q |
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| T |
28310098 |
cctggtcttgtaaatgtttggtgcaccgaggtcgcttttgaggccataagacatgaagatacttgcaaagaatgaa |
28310023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 28305409 - 28305176
Alignment:
| Q |
15 |
atgaacataaggtaaatattgtcttcaacaaaaattaaaattaagtaatatgagataaaacactaaaatatatctagttaatttgagtacaatctctttc |
114 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
28305409 |
atgaacataaggtaaatattgtctttaacataaattaaaattaagtaatatgagataaaacactaaaatagttaaagttaatttgagtacaatctctttc |
28305310 |
T |
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| Q |
115 |
ttagaaatccaactaaagtactagacatattacttttatttttgtttcatgaacctacaaattaacatgaaaagcaaatgcacccttttctctctaacaa |
214 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||| |
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| T |
28305309 |
ttagaaaactaactaaagtactagacatattacttttatttttgtttcatgaacctacaaattaacatgaaaagcaaatgcaac--ttatgctctaacaa |
28305212 |
T |
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| Q |
215 |
gcatcctacaccaacaatgagaagacaatgaagagg |
250 |
Q |
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|||| |||||||||||||| |||||| ||||||| |
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| T |
28305211 |
tcatcatacaccaacaatgaaaagacatagaagagg |
28305176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 19796000 - 19796109
Alignment:
| Q |
13 |
agatgaacataaggtaaatattgtcttcaacaaaaattaaaattaagtaatatgagataaaacactaaaatatatctagttaatttgagtacaatctctt |
112 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
19796000 |
agatgaacataaggtaaatattgtctt-aacagaaattaaaattaagtaatatgagataaaacactaaaa-cgatcaagttaatttgagtacaatctctt |
19796097 |
T |
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| Q |
113 |
tcttagaaatcc |
124 |
Q |
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|||||||||||| |
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| T |
19796098 |
tcttagaaatcc |
19796109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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