View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15357_low_15 (Length: 362)
Name: NF15357_low_15
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15357_low_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 46667108 - 46666755
Alignment:
| Q |
18 |
gattggtttactagtgcttccaagaatgagtgctctgctgctattggcttcaagtggatgcttaatcaggtaggtagagtatcctaacacctcaatttac |
117 |
Q |
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| T |
46667108 |
gattggttcactagtgcttccaagaatgagtgctctgctgctattggctacaagtggatgcttaatcaggtaggtagagtatcctaacacctcaatttac |
46667009 |
T |
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| Q |
118 |
gaatgtatcgtagaag---------aagggtgtgtttattttttaagtagtatttgattttattgaattgagttgtgctatcaccaaacatatggttaat |
208 |
Q |
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| T |
46667008 |
gaatgtatcgtagaagttcttaagtaagggtgtgtttattttttaagtagtatttgattttattgaattgagttgtgctattaccaaacatatggttaat |
46666909 |
T |
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| Q |
209 |
tgaattgcatcacttaacgataaaatttatctaactattgtcatatttttcaataaattaagggtttgatggatcatcataaagaagtagctgaatattt |
308 |
Q |
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| T |
46666908 |
tgaattgcatcattttacgataaaatttctctaactattgtcatatttttcaataaattaagggtttgatggatcatcataaagaaatagttgaatattt |
46666809 |
T |
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| Q |
309 |
ggagcaaaaacgagtttctacaatattcttgttcagaagaaatttactccgtag |
362 |
Q |
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| T |
46666808 |
ggagcaaaaacaagtttctacaatattcttgttcagaagaaatttactccgtag |
46666755 |
T |
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Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 6521941 - 6522001
Alignment:
| Q |
29 |
tagtgcttccaagaatgagtgctctgctgctattggcttcaagtggatgcttaatcaggta |
89 |
Q |
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| T |
6521941 |
tagtgcttccaagaatgagtgttctgccgcaattggcttcaagtggatgcttaatcaggta |
6522001 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 33930298 - 33930366
Alignment:
| Q |
21 |
tggtttactagtgcttccaagaatgagtgctctgctgctattggcttcaagtggatgcttaatcaggta |
89 |
Q |
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| T |
33930298 |
tggtttaatagtgcttctaaaaatgagtgcacggctgctgttggcttgaagtggatgcttaatcaggta |
33930366 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 6117108 - 6117178
Alignment:
| Q |
18 |
gattggtttactagtgcttccaagaatgagtgctctgctgctattggcttcaagtggatgcttaatcaggt |
88 |
Q |
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| T |
6117108 |
gattggtttactagtgcttctaagaatgagtgcaactcagctgtgggtttcaagtggatgcttaatcaggt |
6117178 |
T |
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