View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15357_low_16 (Length: 359)

Name: NF15357_low_16
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15357_low_16
NF15357_low_16
[»] chr7 (10 HSPs)
chr7 (13-305)||(4643269-4643561)
chr7 (200-306)||(4661583-4661689)
chr7 (295-338)||(4662886-4662929)
chr7 (192-235)||(4666697-4666740)
chr7 (14-114)||(4666507-4666607)
chr7 (14-85)||(4630481-4630552)
chr7 (299-338)||(4672575-4672614)
chr7 (295-338)||(4712232-4712275)
chr7 (268-305)||(4630780-4630817)
chr7 (266-302)||(4647384-4647420)
[»] chr4 (2 HSPs)
chr4 (192-239)||(18926028-18926075)
chr4 (301-338)||(18925899-18925936)


Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 305
Target Start/End: Original strand, 4643269 - 4643561
Alignment:
Q  13 cgttctttgtcttcaacaaattatcatccatggcattatgacaccttctcattagccaaaaaacagtgatacctaccgaaattgctagtacgaggccaga 112  Q
    |||||||||||||||| |||||||| |||||| |||||||||||||||| |||| |||||||||||||||||| |  ||||||||||| || ||||||||    
T  4643269 cgttctttgtcttcaataaattatcttccatgacattatgacaccttcttattatccaaaaaacagtgatacccatggaaattgctagcacaaggccaga 4643368  T
Q  113 aatggtagtcacaacaacaatagccacgagtggggtgatcttaattctttttgccgattgggttgaaattgcaatcgcaagattgttatttttgtcactt 212  Q
    ||  | ||||||||||||||||||||| ||||||||||||||| || |||||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  4643369 aactgaagtcacaacaacaatagccacaagtggggtgatcttagttatttttgacgattgggttgaaactgcaatcgcgagattgttatttttgtcactt 4643468  T
Q  213 atttttaaaatttcgataccattcaatatgaaaccagtgtgttctgtcaatgattgaagcttgattgaaagattagctctttcattttgagag 305  Q
    ||||||||||| ||||| |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||  |||||||    
T  4643469 atttttaaaatctcgattccattcaatatgaaaccattgtattctgtcaatggttgaagcttgattgaaagattagctctttcaagttgagag 4643561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 200 - 306
Target Start/End: Original strand, 4661583 - 4661689
Alignment:
Q  200 atttttgtcacttatttttaaaatttcgataccattcaatatgaaaccagtgtgttctgtcaatgattgaagcttgattgaaagattagctctttcattt 299  Q
    ||||| ||||||||| |||||||| || || ||||||||||||| |||| ||| || ||  |||| |||||||||||||||||||| | |||||||| ||    
T  4661583 attttcgtcacttatatttaaaatctcaattccattcaatatgacaccactgtattttgataatggttgaagcttgattgaaagatcaactctttcaatt 4661682  T
Q  300 tgagagt 306  Q
    |||||||    
T  4661683 tgagagt 4661689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 338
Target Start/End: Original strand, 4662886 - 4662929
Alignment:
Q  295 cattttgagagtacatagccacagcataatccttatgaacagga 338  Q
    |||||||||||||||||| |||| ||||||||||||||||||||    
T  4662886 cattttgagagtacatagtcacaccataatccttatgaacagga 4662929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 4666697 - 4666740
Alignment:
Q  192 agattgttatttttgtcacttatttttaaaatttcgataccatt 235  Q
    |||||||||||||||||||||||||||||||| ||||| |||||    
T  4666697 agattgttatttttgtcacttatttttaaaatctcgattccatt 4666740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 4666507 - 4666607
Alignment:
Q  14 gttctttgtcttcaacaaattatcatccatggcattatgacaccttctcattagccaaaaaacagtgatacctaccgaaattgctagtacgaggccagaa 113  Q
    ||||||||| ||| |||| |||||  ||||| |||| ||| |||||||| |||||||||||||  ||||||| ||   ||||||||| |||||||| |||    
T  4666507 gttctttgttttcgacaagttatctgccatgacattgtgaaaccttctccttagccaaaaaactatgatacccacaataattgctagcacgaggcctgaa 4666606  T
Q  114 a 114  Q
    |    
T  4666607 a 4666607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 4630481 - 4630552
Alignment:
Q  14 gttctttgtcttcaacaaattatcatccatggcattatgacaccttctcattagccaaaaaacagtgatacc 85  Q
    ||||||||||||  || |||||||  |||||||||| ||  |||||||| |||||||||||| |||||||||    
T  4630481 gttctttgtcttacacgaattatctgccatggcattgtgtaaccttctccttagccaaaaaatagtgatacc 4630552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 4672575 - 4672614
Alignment:
Q  299 ttgagagtacatagccacagcataatccttatgaacagga 338  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  4672575 ttgagagtacatagtgacagcataatccttatgaacagga 4672614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 338
Target Start/End: Complemental strand, 4712275 - 4712232
Alignment:
Q  295 cattttgagagtacatagccacagcataatccttatgaacagga 338  Q
    ||||||||||||||||   |||||||||||||||||||||||||    
T  4712275 cattttgagagtacattttcacagcataatccttatgaacagga 4712232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 4630780 - 4630817
Alignment:
Q  268 gaagcttgattgaaagattagctctttcattttgagag 305  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  4630780 gaagcttgattgaaagattaactctttcaatttgagag 4630817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 4647384 - 4647420
Alignment:
Q  266 ttgaagcttgattgaaagattagctctttcattttga 302  Q
    |||||||||||||||||||||| |||||||| |||||    
T  4647384 ttgaagcttgattgaaagattaactctttcaatttga 4647420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 18926075 - 18926028
Alignment:
Q  192 agattgttatttttgtcacttatttttaaaatttcgataccattcaat 239  Q
    |||||||||||||||||||||||||| ||||| ||||| |||||||||    
T  18926075 agattgttatttttgtcacttattttcaaaatctcgatcccattcaat 18926028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 338
Target Start/End: Complemental strand, 18925936 - 18925899
Alignment:
Q  301 gagagtacatagccacagcataatccttatgaacagga 338  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  18925936 gagagtacatagtcacaacataatccttatgaacagga 18925899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University