View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15357_low_18 (Length: 346)
Name: NF15357_low_18
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15357_low_18 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 346
Target Start/End: Original strand, 1048733 - 1049050
Alignment:
| Q |
20 |
tacatatagaggaattaaaaaatatattttctacatttttatttactaatatgattgcggtataaaaacataaagtctgtggtgg--acaagagataaat |
117 |
Q |
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| T |
1048733 |
tacatatagaggaattaaaaaatatattttctacatttttatttactaatatgattgcggtataaaaacataaagtctgtggtggggacaagagataaat |
1048832 |
T |
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| Q |
118 |
agtccatggaaaatatttgcttgactttgagtttttgtaagtttgatgactttattgtattttaacaagagataatggttaatcaaaaccttataacaat |
217 |
Q |
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| T |
1048833 |
agtccatggaaaatatttgcttgactttgagtttttgtaagtttg-------tattcaa----aacaagagataatggttaatcaaaaccttataacaat |
1048921 |
T |
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| Q |
218 |
ctataaagataactttacctacaagagaatgttaacaagaggcaattagtgcataagcatgacttatctctcagcagttctctccactccaacttctact |
317 |
Q |
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| T |
1048922 |
ctataaagataactttacctacaagagaatgttaacaagaggcaattagtgcataagcatgacttatctctcagcagttctctccactccaacttctact |
1049021 |
T |
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| Q |
318 |
ctgccattcaaatgtagaattgattccca |
346 |
Q |
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| T |
1049022 |
ctgccattcagatgtagaattgattccca |
1049050 |
T |
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