View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15357_low_2 (Length: 639)

Name: NF15357_low_2
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15357_low_2
NF15357_low_2
[»] chr6 (4 HSPs)
chr6 (19-625)||(22506086-22506699)
chr6 (468-598)||(22501147-22501279)
chr6 (391-445)||(21882116-21882170)
chr6 (353-411)||(30777199-30777257)
[»] chr3 (5 HSPs)
chr3 (297-451)||(3195324-3195478)
chr3 (343-449)||(10877115-10877221)
chr3 (300-405)||(32324539-32324644)
chr3 (300-405)||(34964186-34964291)
chr3 (297-387)||(40291417-40291507)
[»] chr1 (2 HSPs)
chr1 (330-434)||(27126379-27126483)
chr1 (341-387)||(51103025-51103071)
[»] chr4 (2 HSPs)
chr4 (300-449)||(4299384-4299534)
chr4 (331-425)||(56576421-56576514)
[»] chr8 (3 HSPs)
chr8 (231-283)||(40959974-40960026)
chr8 (365-449)||(3683659-3683743)
chr8 (407-449)||(1908213-1908255)
[»] chr2 (5 HSPs)
chr2 (300-422)||(12023712-12023834)
chr2 (468-538)||(22983454-22983526)
chr2 (310-386)||(9553414-9553489)
chr2 (330-442)||(23767387-23767499)
chr2 (355-442)||(23796557-23796644)
[»] chr7 (1 HSPs)
chr7 (304-404)||(33677416-33677515)


Alignment Details
Target: chr6 (Bit Score: 493; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 19 - 625
Target Start/End: Complemental strand, 22506699 - 22506086
Alignment:
Q  19 taatataatggtat--gctactaaaaactgagtttaacagaaccaatctattttagcacatttaaaatgctagtaaaataaaagaatgtaatttttctcg 116  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22506699 taatataatggtatatgctactaaaaactgagtttaacagaaccaatctattttagcacatttaaaatgctagtaaaataaaagaatgtaatttttctcg 22506600  T
Q  117 gagtttattgacagcggtaattttccttggaagactcaaaaaacatgattaacggcccctatcatatcatagcaaaagatctagaaactcttatgttttg 216  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||  |||||||||||||||||||||||||||||||    
T  22506599 gagattattgacagcggtaattttccttggaagactcaaaaaacatgtttaacgg--cctatcatattgtagcaaaagatctagaaactcttatgttttg 22506502  T
Q  217 ttctttagcaatgtgaccaccctgtattggacccaatgatttaattttcttgtattttcatggaggcttccnnnnnnnnnggcgttaaccctccagttcc 316  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||         |||||||||||||| |||||    
T  22506501 ttctttagcaatgtgaccaccctgcattggacccaatgatttaattttcttgtattttcatggaggcatcctttttttttggcgttaaccctccggttcc 22506402  T
Q  317 cagtggaaagggtccctagtaacccggagttcggcagtgaggtaaggatagtctggctaataattgttccaactaggaatcgaactcggcttctctcaaa 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  22506401 cagtggaaagggtccctagtaacccggagttcggcagtgaggtaaggatagtctggccaataattgttccaactaggaatcgaactcggcttctcccaaa 22506302  T
Q  417 caattcatcgttggtgaagttcattaacc-------acttaaatgtagatagtactcatcaagtgtttaactaactgatacttctccatcaagaagttct 509  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22506301 caattcatcgttggtgaagttcattaaccacttaaaacttaaatgtagatagtactcatcaagtgtttaactaactgatacttctccatcaagaagttct 22506202  T
Q  510 caccttttaagagaaagatcattagatttaagatgtctttctttcaaatctatctctgatccttttgcatcaattatgatttaatttttctactattcag 609  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22506201 caccttttaagagaaagatcattagatttaagatgtctttctttgaaatctatctctgatccttttgcatcaattatgatttagtttttctactattcag 22506102  T
Q  610 tttatactggtctgcc 625  Q
    | ||||||||||||||    
T  22506101 tctatactggtctgcc 22506086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 468 - 598
Target Start/End: Complemental strand, 22501279 - 22501147
Alignment:
Q  468 tcaagtgtttaactaactgatacttctccatcaagaagt--tctcaccttttaagagaaagatcattagatttaagatgtctttctttcaaatctatctc 565  Q
    ||||||||||||||||||||||||| | ||||||||| |  |||||| ||||||||||||||||||||||||||||||| |||||| || |||||||||     
T  22501279 tcaagtgtttaactaactgatacttttgcatcaagaaatcttctcacgttttaagagaaagatcattagatttaagatgcctttctgtccaatctatctt 22501180  T
Q  566 tgatccttttgcatcaattatgatttaattttt 598  Q
     ||||||| |||||||||||||||||| |||||    
T  22501179 agatccttctgcatcaattatgatttagttttt 22501147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 21882116 - 21882170
Alignment:
Q  391 aggaatcgaactcggcttctctcaaacaattcatcgttggtgaagttcattaacc 445  Q
    |||| ||||||||||||||| |||||||||||||| |  ||||||||||||||||    
T  21882116 aggagtcgaactcggcttctttcaaacaattcatcatctgtgaagttcattaacc 21882170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 353 - 411
Target Start/End: Original strand, 30777199 - 30777257
Alignment:
Q  353 gtgaggtaaggatagtctggctaataattgttccaactaggaatcgaactcggcttctc 411  Q
    |||||||||||||||||| || |  |||| ||||| ||||||||||||||||| |||||    
T  30777199 gtgaggtaaggatagtctagccacgaattattccagctaggaatcgaactcgggttctc 30777257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 297 - 451
Target Start/End: Complemental strand, 3195478 - 3195324
Alignment:
Q  297 ggcgttaaccctccagttcccagtggaaagggtccctagtaacccggagttcggcagtgaggtaaggatagtctggctaataattgttccaactaggaat 396  Q
    |||||||||||||||||| |||| |||||| | |||| |||| ||||||||| |   | ||||||||||||||| |  || |||||||||| |||||||     
T  3195478 ggcgttaaccctccagtttccaggggaaagaggccctggtaatccggagttcagttataaggtaaggatagtctcgtcaagaattgttccacctaggaaa 3195379  T
Q  397 cgaactcggcttctctcaaacaattcatcgttggtgaagttcattaaccacttaa 451  Q
     |||||| | ||||| | | | ||||||| ||||||||| |||||||||||||||    
T  3195378 tgaactcagtttctcccgagcgattcatccttggtgaagctcattaaccacttaa 3195324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 343 - 449
Target Start/End: Complemental strand, 10877221 - 10877115
Alignment:
Q  343 gagttcggcagtgaggtaaggatagtctggctaataattgttccaactaggaatcgaactcggcttctctcaaacaattcatcgttggtgaagttcatta 442  Q
    |||||||||  |||||||||||||||||||| || |||||||| |  |||||||||||||| | ||||| ||||| |||| || | ||||||| ||||||    
T  10877221 gagttcggccatgaggtaaggatagtctggccaagaattgttctacataggaatcgaactcaggttctcccaaacgattcgtcctcggtgaagctcatta 10877122  T
Q  443 accactt 449  Q
    |||||||    
T  10877121 accactt 10877115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 300 - 405
Target Start/End: Original strand, 32324539 - 32324644
Alignment:
Q  300 gttaaccctccagttcccagtggaaagggtccctagtaacccggagttcggcagtgaggtaaggatagtctggctaataattgttccaactaggaatcga 399  Q
    |||||||||||||||||  | |||||||| ||||||||| |||||||| ||| | |||||||| | || ||||| || ||||||||| || ||||||| |    
T  32324539 gttaaccctccagttccttggggaaaggggccctagtaatccggagtttggccgggaggtaagtaaagcctggccaagaattgttcccaccaggaatcaa 32324638  T
Q  400 actcgg 405  Q
    ||||||    
T  32324639 actcgg 32324644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 300 - 405
Target Start/End: Complemental strand, 34964291 - 34964186
Alignment:
Q  300 gttaaccctccagttcccagtggaaagggtccctagtaacccggagttcggcagtgaggtaaggatagtctggctaataattgttccaactaggaatcga 399  Q
    ||||||||||| ||||| || |||||||  || ||||||   |||||||||| | |||||||| | |||||||  |||||||||||| | ||||||||||    
T  34964291 gttaaccctccggttcctaggggaaaggtgccatagtaagttggagttcggctgggaggtaagtaaagtctggtcaataattgttcccattaggaatcga 34964192  T
Q  400 actcgg 405  Q
    ||||||    
T  34964191 actcgg 34964186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 387
Target Start/End: Original strand, 40291417 - 40291507
Alignment:
Q  297 ggcgttaaccctccagttcccagtggaaagggtccctagtaacccggagttcggcagtgaggtaaggatagtctggctaataattgttcca 387  Q
    |||||||||||||| |||| ||| |||| ||| | ||||||| ||||||| |||  |||||||||||||| ||| | ||| ||||||||||    
T  40291417 ggcgttaaccctccggttctcagaggaatggggctctagtaatccggagtgcggtcgtgaggtaaggatactcttgttaagaattgttcca 40291507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 330 - 434
Target Start/End: Original strand, 27126379 - 27126483
Alignment:
Q  330 ccctagtaacccggagttcggcagtgaggtaaggatagtctggctaataattgttccaactaggaatcgaactcggcttctctcaaacaattcatcgttg 429  Q
    |||||||||  ||||||||||  |||||||||||||| |||||| || |||||||||| ||| |||||||| | || ||||||||||| |||  || |||    
T  27126379 ccctagtaattcggagttcggtcgtgaggtaaggataatctggccaaaaattgttccatctaagaatcgaatttgggttctctcaaacgattagtccttg 27126478  T
Q  430 gtgaa 434  Q
    |||||    
T  27126479 gtgaa 27126483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 341 - 387
Target Start/End: Complemental strand, 51103071 - 51103025
Alignment:
Q  341 cggagttcggcagtgaggtaaggatagtctggctaataattgttcca 387  Q
    ||||||| ||| |||||||||| ||||||||||||| ||||||||||    
T  51103071 cggagtttggctgtgaggtaagtatagtctggctaagaattgttcca 51103025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 300 - 449
Target Start/End: Complemental strand, 4299534 - 4299384
Alignment:
Q  300 gttaaccctccagttcccagtggaaagggtccctagtaacccggagttcggcagtgaggtaaggatagtctggctaataattgttccaactaggaatcga 399  Q
    ||||||||||| ||||| || |||||||  ||||||||| |||| |||| || | |||||||| | || |||||||| ||||||| || | |||||||||    
T  4299534 gttaaccctccggttcctaggggaaaggagccctagtaatccggtgttcagccgcgaggtaagtaaagcctggctaagaattgttacacccaggaatcga 4299435  T
Q  400 actcggcttctctcaaacaattcat-cgttggtgaagttcattaaccactt 449  Q
    |||||  ||||| | | | |||| | | ||||||||| |||||||||||||    
T  4299434 actcgcgttctcccgagcgattcgtcctttggtgaagctcattaaccactt 4299384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 425
Target Start/End: Complemental strand, 56576514 - 56576421
Alignment:
Q  331 cctagtaacccggagttcggcagtgaggtaaggatagtctggctaataattgttccaactaggaatcgaactcggcttctctcaaacaattcatc 425  Q
    ||||||||||||||||||||| | |||||||| | ||| ||||| | |||| |||| || ||| ||| ||||||| ||||||| ||| |||||||    
T  56576514 cctagtaacccggagttcggccgggaggtaagtaaagtttggct-agaattattcccaccaggtatcaaactcgggttctctcgaacgattcatc 56576421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 40959974 - 40960026
Alignment:
Q  231 gaccaccctgtattggacccaatgatttaattttcttgtattttcatggaggc 283  Q
    |||||||||| |||||||||||||||||  ||||||||||||||||| |||||    
T  40959974 gaccaccctgcattggacccaatgatttgtttttcttgtattttcattgaggc 40960026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 365 - 449
Target Start/End: Complemental strand, 3683743 - 3683659
Alignment:
Q  365 tagtctggctaataattgttccaactaggaatcgaactcggcttctctcaaacaattcatcgttggtgaagttcattaaccactt 449  Q
    |||| ||||||||| || ||||| | ||||||||| |||   |||||  |||||||||||  |||||||||||||||||||||||    
T  3683743 tagtttggctaatagttattccatcaaggaatcgatctcaagttctccgaaacaattcatttttggtgaagttcattaaccactt 3683659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 407 - 449
Target Start/End: Original strand, 1908213 - 1908255
Alignment:
Q  407 ttctctcaaacaattcatcgttggtgaagttcattaaccactt 449  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||    
T  1908213 ttctctcaaacaattcatcattgatgaagttcgttaaccactt 1908255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 422
Target Start/End: Original strand, 12023712 - 12023834
Alignment:
Q  300 gttaaccctccagttcccagtggaaagggtccctagtaacccggagttcggcagtgaggtaaggatagtctggctaataattgttccaactaggaatcga 399  Q
    ||||||||||||||||| || |||| ||| | ||||||| | |||||||||   ||||||||| | || ||| | || |||||||||| | |||||||||    
T  12023712 gttaaccctccagttcctaggggaagggggctctagtaatctggagttcggtcatgaggtaagtacagcctgaccaagaattgttccacccaggaatcga 12023811  T
Q  400 actcggcttctctcaaacaattc 422  Q
    |||||| | ||| | ||||||||    
T  12023812 actcgggtcctcccgaacaattc 12023834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 468 - 538
Target Start/End: Complemental strand, 22983526 - 22983454
Alignment:
Q  468 tcaagtgtttaactaactgatacttctccatcaagaa--gttctcaccttttaagagaaagatcattagattt 538  Q
    |||||||||||||||| |||| ||| |||||||||||   ||||||| ||| |||||||||||||| ||||||    
T  22983526 tcaagtgtttaactaaatgatccttttccatcaagaaattttctcacttttcaagagaaagatcatgagattt 22983454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 310 - 386
Target Start/End: Complemental strand, 9553489 - 9553414
Alignment:
Q  310 cagttcccagtggaaagggtccctagtaacccggagttcggcagtgaggtaaggatagtctggctaataattgttcc 386  Q
    ||||||||||| |||||| |||||||||| ||||||||||| || ||||||||   |||||||| || |||||||||    
T  9553489 cagttcccagtcgaaaggatccctagtaatccggagttcggtag-gaggtaagtgaagtctggcgaagaattgttcc 9553414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 442
Target Start/End: Complemental strand, 23767499 - 23767387
Alignment:
Q  330 ccctagtaacccggagttcggcagtgaggtaaggatagtctggctaataattgttccaactaggaatcgaactcggcttctctcaaacaattcatcgttg 429  Q
    |||| |||| |||||||||  | | ||||||||||||| ||| | || |||||||| | ||| ||||||||| ||| ||||||| ||  ||||||| |||    
T  23767499 ccctggtaatccggagttcatccgcgaggtaaggatagcctgacgaagaattgttctacctaagaatcgaacccgggttctctcgaatgattcatcattg 23767400  T
Q  430 gtgaagttcatta 442  Q
    |||||| ||||||    
T  23767399 gtgaagctcatta 23767387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 442
Target Start/End: Complemental strand, 23796644 - 23796557
Alignment:
Q  355 gaggtaaggatagtctggctaataattgttccaactaggaatcgaactcggcttctctcaaacaattcatcgttggtgaagttcatta 442  Q
    ||||||||||||| ||| | || |||||||| | ||| |||||||||| || ||||||| ||  ||||||| ||||||||| ||||||    
T  23796644 gaggtaaggatagcctgacgaagaattgttctacctaagaatcgaacttggattctctcgaatgattcatcattggtgaagctcatta 23796557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 404
Target Start/End: Original strand, 33677416 - 33677515
Alignment:
Q  304 accctccagttcccagtggaaagggtccctagtaacccggagttcggcagtgaggtaaggatagtctggctaataattgttccaactaggaatcgaactc 403  Q
    ||||||| |||||||| |||| ||| ||||  ||| ||||||||||||  ||||||||| |||| | | |||| |||| ||||| | |||||||||||||    
T  33677416 accctccggttcccagaggaa-gggccccttttaatccggagttcggctatgaggtaagtatagcccgactaaaaattattccacccaggaatcgaactc 33677514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University