View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15357_low_20 (Length: 323)
Name: NF15357_low_20
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15357_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 44 - 304
Target Start/End: Complemental strand, 30805191 - 30804931
Alignment:
| Q |
44 |
tcatggcactgcatgcaatttgaagtacacacccacttgaaaattgaaagtaagtatggcaaatgtgatgaataggtagcaatagcattggaaaactgca |
143 |
Q |
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| T |
30805191 |
tcatggtactacatgcaatttgaagtacacacccacttgaaaattgaaagtaagtatggcaaatgtgatgaataggtagcaatagcattggaaaactgca |
30805092 |
T |
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| Q |
144 |
tnnnnnnntacgtggcatagttattagctaagagtttgattctgcatgacacgcgcaaggcatgccctagatagattttgtgctgttttctgcaacaaaa |
243 |
Q |
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| T |
30805091 |
taaaaaaatacgtggcatagttattagctaaaagtttgattctgcatgacacgcgcaaggcatgccctagatagattttgtgctgttttctgcaacaaaa |
30804992 |
T |
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| Q |
244 |
atattgatattcattagtaaccgttctatgaatcaactcaaacttcagcatatggcaactt |
304 |
Q |
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| T |
30804991 |
atattgatattcattagtaaccgttctatgaatcaactcaaacttcagcatatggcaactt |
30804931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 44 - 304
Target Start/End: Complemental strand, 30816961 - 30816701
Alignment:
| Q |
44 |
tcatggcactgcatgcaatttgaagtacacacccacttgaaaattgaaagtaagtatggcaaatgtgatgaataggtagcaatagcattggaaaactgca |
143 |
Q |
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| T |
30816961 |
tcatggtactgcatgcaatttgaagtacacacgcacttgaaaattgaaagtaagtatggcaaatgtgatgaataggtagcaatagcattgaaaaactgca |
30816862 |
T |
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| Q |
144 |
tnnnnnnntacgtggcatagttattagctaagagtttgattctgcatgacacgcgcaaggcatgccctagatagattttgtgctgttttctgcaacaaaa |
243 |
Q |
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| T |
30816861 |
taaaaaaatacgtggcatagttattagctaagagtttgattctgcatgacacgcgcaaggcatgccctagatagattttgtgctgttttctgcaacaaaa |
30816762 |
T |
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| Q |
244 |
atattgatattcattagtaaccgttctatgaatcaactcaaacttcagcatatggcaactt |
304 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30816761 |
atattgagtttcagtagtaaccgttctatgaatcaactcaaacttcagcatatggcaactt |
30816701 |
T |
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