View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15357_low_23 (Length: 317)
Name: NF15357_low_23
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15357_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 5e-93; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 4388786 - 4389015
Alignment:
| Q |
8 |
gacatcatcattataagttttttgccacaaaaggtttctgttcttagcatggacctaaacaaattcaaata-aattaatataagcaagtaagtgctaggt |
106 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4388786 |
gacaacatcattataagttttttgccacaaaaggtttctgttcttagcatggacctaaacaaattcaaatacaattaatataagcaagtaagtgctaggt |
4388885 |
T |
|
| Q |
107 |
attttacaattcacgttcaatannnnnnncatcttaccatctcaaatgcactctgattacgctcacccccataagaactgcatgtcaagcttaatacacg |
206 |
Q |
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||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4388886 |
attttacaattgacattcaatatttttttcatcttaccatctcaaatgcactctgattacgctcacccccataagaactgcatgtcaagcttaatacacg |
4388985 |
T |
|
| Q |
207 |
aattgcaaatttttggagctctggtggtcc |
236 |
Q |
| |
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| ||||||||||||||||||||| |||| |
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|
| T |
4388986 |
acacgcaaatttttggagctctggtagtcc |
4389015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 175 - 299
Target Start/End: Original strand, 4369102 - 4369226
Alignment:
| Q |
175 |
ccataagaactgcatgtcaagcttaatacacgaattgcaaatttttggagctctggtggtccatctactaacgatccccaccaaattggtggaatctcca |
274 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4369102 |
ccataacaactgcatgtcaagcttaatacacgaattgcaaatttttggagctctggtggtccatctactaacgatccccaccaaattggtggaatctcca |
4369201 |
T |
|
| Q |
275 |
tatcagctgtaattatggctattgg |
299 |
Q |
| |
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||||||| ||||||||||||||||| |
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| T |
4369202 |
tatcagccgtaattatggctattgg |
4369226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 4376098 - 4376320
Alignment:
| Q |
14 |
atcattataagttttttgccacaaaaggtttctgttcttagcatggacctaaacaaattcaaata-aattaatataagcaagtaagtgctaggtatttta |
112 |
Q |
| |
|
|||||||||| | |||||||||||| |||||| ||||||||||||||||| ||||| |||||| ||||| |||||||||||||||||| |||||||| |
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|
| T |
4376098 |
atcattataaatattttgccacaaagagtttcttctcttagcatggacctaa-caaatacaaatacaattagcataagcaagtaagtgctatgtatttta |
4376196 |
T |
|
| Q |
113 |
caattcacgttcaatannnnnnncatcttaccatctcaaatgcactctgattacgctcacccccataagaactgcatgtcaagcttaatacacgaattgc |
212 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4376197 |
caattcacattcaatatttttctcatcttaccatctcaaatgcactccgattatgatcacccccataagaactgcatgtcaagcttaatacacgacatgc |
4376296 |
T |
|
| Q |
213 |
aaatttttggagctctggtggtcc |
236 |
Q |
| |
|
||||||||||||||| ||| |||| |
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|
| T |
4376297 |
aaatttttggagctccggtagtcc |
4376320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 174 - 299
Target Start/End: Original strand, 4364701 - 4364826
Alignment:
| Q |
174 |
cccataagaactgcatgtcaagcttaatacacgaattgcaaatttttggagctctggtggtccatctactaacgatccccaccaaattggtggaatctcc |
273 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
4364701 |
cccataagaactgcttgtcaagcttaatacacggattgcaaatttctgtagctctggtggtccatctactaacgatgcccaccaaattggtggaatctcc |
4364800 |
T |
|
| Q |
274 |
atatcagctgtaattatggctattgg |
299 |
Q |
| |
|
|||||||||||||||| ||||||||| |
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|
| T |
4364801 |
atatcagctgtaattacggctattgg |
4364826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 8 - 294
Target Start/End: Original strand, 4383663 - 4383952
Alignment:
| Q |
8 |
gacatcatcattataagttttttgccacaaaaggtttctgttcttagcatggacctaaacaaattcaaata-aattaatataagcaagta--agtgctag |
104 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||| |||||||||| |||| ||||||| | ||| |||||| |||| || ||| | | ||| |
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|
| T |
4383663 |
gacagcatcattataagccttttgccacaaaaggtttcttctcttagcatgaacctgaacaaatatagatacaattaagataatcaggtactactactaa |
4383762 |
T |
|
| Q |
105 |
gtattttacaattcacgttcaatannnnnnncatcttaccatctcaaatgcactctgattacgctcacccccataagaactgcatgtcaagcttaataca |
204 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4383763 |
gtattttacaattcacattcaatatttttttcatcttaccatctcgaaggcactccgattacgctcacccccataagaactgcatgtcaagcttaataca |
4383862 |
T |
|
| Q |
205 |
cgaattgcaaatttttggagctctggtggtccatctactaacgatccccaccaaattggtggaatctccatatcagctgtaattatggct |
294 |
Q |
| |
|
||| ||||||||||||||||| ||| |||| ||| | || | || |||||||| || ||||||||| ||| |||||| |||||||| |
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| T |
4383863 |
cgacacgcaaatttttggagctccggtagtccctctccaaaggctctccaccaaactgatggaatctcaatacgagctgtccttatggct |
4383952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 139 - 286
Target Start/End: Complemental strand, 5726616 - 5726469
Alignment:
| Q |
139 |
cttaccatctcaaatgcactctgattacgctcacccccataagaactgcatgtcaagcttaatacacgaattgcaaatttttggagctctggtggtccat |
238 |
Q |
| |
|
||||||||||| || ||||| | ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||| | |||| |
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|
| T |
5726616 |
cttaccatctcgaaggcacttttattacgctcacccccataagaactgcatgccaagcataatacacgaattgcaaatttctggagctctggttgaccat |
5726517 |
T |
|
| Q |
239 |
ctactaacgatccccaccaaattggtggaatctccatatcagctgtaa |
286 |
Q |
| |
|
||| | ||| ||||||||| ||||||| |||| ||||||||||| |
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|
| T |
5726516 |
ctataatagatgcccaccaaactggtggagtctcttcatcagctgtaa |
5726469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 299
Target Start/End: Original strand, 4359286 - 4359449
Alignment:
| Q |
136 |
catcttaccatctcaaatgcactctgattacgctcacccccataagaactgcatgtcaagcttaatacacgaattgcaaatttttggagctctggtggtc |
235 |
Q |
| |
|
|||||||||||||| || || || ||||| ||||||||||||||||||||| |||||||| ||||||||||||||| || || ||||| |||| | |
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|
| T |
4359286 |
catcttaccatctcgaaggccttccgattatgctcacccccataagaactgcctgtcaagcataatacacgaattgcgaaattctggagatctgcatatt |
4359385 |
T |
|
| Q |
236 |
catctactaacgatccccaccaaattggtggaatctccatatcagctgtaattatggctattgg |
299 |
Q |
| |
|
||||| | || ||| ||||||||||||||||| ||||| | |||| ||||||||||||||||| |
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|
| T |
4359386 |
catctgcgaaagatgcccaccaaattggtggagtctcctcaccagcagtaattatggctattgg |
4359449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 4415733 - 4415533
Alignment:
| Q |
27 |
ttttgccacaaaaggtttctgttcttagcatggacctaaacaaattcaaata-aattaatataagcaagtaagtgctaggtattttacaattcacgttca |
125 |
Q |
| |
|
||||||| |||| ||||||| ||||||| |||||||| || ||| |||||| |||||||||||||||||| |||||||||||||||||| |||| |
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|
| T |
4415733 |
ttttgcctcaaacggtttcttctcttagcgtggacctataccaatacaaatacaattaatataagcaagtag----taggtattttacaattcatattca |
4415638 |
T |
|
| Q |
126 |
atannnnnnn-catcttaccatctcaaatgcactctgattacgctcacccccataagaactgcatgtcaagcttaatacacgaattgcaaatttttggag |
224 |
Q |
| |
|
|| |||||||||||||| | |||||||||||| ||||||||||||||||||| ||||||||||| |||| |||||| || ||||||| || |
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|
| T |
4415637 |
atgttttttatcatcttaccatctcgtaggcactctgattatgctcacccccataagaactacatgtcaagctcaatatacgaatggccaatttttttag |
4415538 |
T |
|
| Q |
225 |
ctctg |
229 |
Q |
| |
|
||||| |
|
|
| T |
4415537 |
ctctg |
4415533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 3596078 - 3595847
Alignment:
| Q |
8 |
gacatcatcattataagttttttgccacaaaaggtttctgttcttagcatggacctaaacaaattcaaata-------aattaatataagcaagtaagtg |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| |||||||| ||||| |
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|
| T |
3596078 |
gacaacatcattataagttttttgccacaaaaggtttcttctcttagcatggacctaaacaaatacaaatacaaatacaattaagataagcaattaagta |
3595979 |
T |
|
| Q |
101 |
ctaggtattttacaattcacgttcaatannnnnnncatcttaccatctcaaatgcactctgattacgctcacccccataagaactgcatgtcaagcttaa |
200 |
Q |
| |
|
||| |||||||||||||||| |||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||| |
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|
| T |
3595978 |
ctatgtattttacaattcacattcaat--ttttttcatcttaccatctcaaaggcactctgattactctcacccccataagaacttcatgtcaagcttaa |
3595881 |
T |
|
| Q |
201 |
tacacgaattgcaaatttttggagctctggtggtcc |
236 |
Q |
| |
|
||||||| |||||||||||||||||||| |||| |
|
|
| T |
3595880 |
tacacga--cacaaatttttggagctctggtagtcc |
3595847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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