View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15357_low_25 (Length: 287)
Name: NF15357_low_25
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15357_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 271
Target Start/End: Original strand, 17352314 - 17352571
Alignment:
| Q |
11 |
cagagatcaggaccatgtatgtgtaaagctgcccttccccactcaacattgaatatgctactgctactaaagaaaacagatgatgaattacctgaaccaa |
110 |
Q |
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| T |
17352314 |
cagagatcaggaccatgtatgtgtaaagctgcccttccccgctcaacattgaatatgctactgctactaaagaaaatagatgatgaattacctgaaccaa |
17352413 |
T |
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| Q |
111 |
tgttaataagaagacaagttaaatctcgactccagctgggttcctataaagtgaaatgtcttaaattgaacaagagcattcaaccacataagaaagttgg |
210 |
Q |
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| T |
17352414 |
tgttaataaga---caagttaaatctcaactcctgttgggttcctataaagtgaaatgtcttaaattgaacaagagcattcaaccacataagaaagttag |
17352510 |
T |
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| Q |
211 |
cttaatatatacaaaagttgagaagatattatccttacatactcatatccaccaagagaag |
271 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17352511 |
cttaatatatgcaaaagttgagaagatattatccttacatactcatatccaccaagagaag |
17352571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 39439298 - 39439397
Alignment:
| Q |
11 |
cagagatcaggaccatgtatgtgtaaagctgcccttccccactcaacattgaatatgctactgctactaaagaaaacagatgatgaattacctgaaccaa |
110 |
Q |
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||||||| || |||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
39439298 |
cagagatgagaaccatgtatgtgtacagctgtccttctccactcaacattgaataggctactgctactaaagaaaagagatgatgaatcacctgaaccaa |
39439397 |
T |
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