View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15357_low_26 (Length: 277)
Name: NF15357_low_26
Description: NF15357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15357_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 30005082 - 30005341
Alignment:
| Q |
1 |
tagtttcattataatatatacaaaatagttatcaattttattgccatatttactgctaggtgctagcgtacttgactacctacaaatttttgttcaannn |
100 |
Q |
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| T |
30005082 |
tagtttcattataatatatacaaaatagttatcaattttattgccatatttactgctaggtgctagcgtacttgactacctacaaatttttgttcaattt |
30005181 |
T |
|
| Q |
101 |
nnnnggggcaattttattccttattgtagattattgcattcacagcaaagtttcattctttggtttgtaggaagttgctgtcaaaaggtttctaaatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30005182 |
tttaggggcaattttattccttattgtagattattgcattcacagcaaagtttcattctttggtttgtaggaagttgctgtcaaaaggtttctaaatcaa |
30005281 |
T |
|
| Q |
201 |
gatatatctggtgaggcacttgaagaattcataagtgaggtataagtcacttatcctcct |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30005282 |
gatatatctggtgaggcacttgaagaattcataagtgaggtataagtcacttatcctcct |
30005341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 112 - 260
Target Start/End: Original strand, 5525329 - 5525477
Alignment:
| Q |
112 |
ttttattccttattgtagattattgcattcacagcaaagtttcattctttggtttgtaggaagttgctgtcaaaaggtttctaaatcaagatatatctgg |
211 |
Q |
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|||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
5525329 |
ttttattccttattgtagatgattgcagtcacaacaaagtttcattctttggtttgtaggaagttgttgtcaaaaggtttctagatcaagatatatctgg |
5525428 |
T |
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| Q |
212 |
tgaggcacttgaagaattcataagtgaggtataagtcacttatcctcct |
260 |
Q |
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| T |
5525429 |
tgaggcacttgaagaattcataagtgaggcataggtcacttatcctcct |
5525477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 45203171 - 45203256
Alignment:
| Q |
157 |
tctttggtttgtaggaagttgctgtcaaaaggtttctaaatcaagatatatctggtgaggcacttgaagaattcataagtgaggta |
242 |
Q |
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|||||| ||| |||||||||||||| || ||||||||| ||||||||| |||||||| ||||||||||||||| |||||||||| |
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| T |
45203171 |
tctttgatttctaggaagttgctgtaaagaggtttctacttcaagatatctctggtgaatcacttgaagaattcaaaagtgaggta |
45203256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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